Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1434 ATGTCGGTTTTACCAAGCATGGAGCTTCCTACAACTGATGTGGACCTTGAGCCTAAGAAGATTGAACCTGAGAAAAACGAAGGTCCCTTGTTCCATTGTGATTTTTGTGATACAGAAGTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTGTGCCTGTGTTGATAACACCACAGGCGGTCCCTTCAAGACCCCTGGTTCAGTGGCTGTTGATCTGAGAAAGGAAATGATAGAATTTGTCACCCAAAAGAGCGAATCGTTTGTTGCTGAGTCTGTTATCTTAGAGGGTGGTCCTGATGGCGGAGCATTGGAACACCCTTTTGATATCATTTGCTATTTTGTTGATGAGTTTGTTAGTTCAAAGAGGAATTTGTTGAGCCAGGTTTCGGGGTGGCTGCTGAGTGATAAGAGAGAGGACAAAATAGACGATTTTGTTCAGGAGATGGAAATGAATGGTTTTTGGCCGCTGGATAGAAGAGAAACACTTGCAAAAACTTTGATCAAGAATGTTGACGTGAAGAGCTCGTTTCATTGCAGCATGAGTTTTAAATCGGCACGAGATCTTGCCAACCATGCTGACGATGGTTGCAACTTCAGGCCTGTGATCTGCCGAAATGAAGGGTGCGACGCCAGATTCAGTGCTGGTCATTTGAAGGAGCATGATTCAGCTTGTGATTTCAAGATAGTTCCATGTGAACAGAAGTGCACAGATAGCATTTTGAGACGCGAGATGGATAGGCACTGCATAACTGTTTGCCCAATGAAGCTTGTGAATTGCCCTTTCTATGCAGTGGGTTGTAGATCTGCTATTGCACAAAGTATGATTAGAAAACATTGTTCAGATGACATCGAGTCTCACCTGTTGCTCATGCTTAAAGGCATCCACCAGGAGGCATCAGGCGAAGATCTAAAACGACGTGTGGAGCAAATTTTACAGGCGTCATCAAGAAGCAAATTAGCAGAGGCTCGGGATGTGAGATCTTATAAAAATATTGTCAAGGACCTTGAAGTTAAGCTAGGGCCTCTTGAAGTGATTGCCAAAGAGAAAACTAGTGCAGAAACTGTTGCCGAGAATGAAGATAGTGAAGACAATAGAACCAAAACAAAAGACAAGGAGCAGCACACACAAACTTTGAATTCATTGGATAAAGCTGAAGTGAGTGCCATCTTGGAAAAGACTTGTGCAGGGAATGCTGTCAATAAAGTGGATAGTGAACATAAGGAAAATGGAAAGCAAGGGTAG 1251 0.4349 MSVLPSMELPTTDVDLEPKKIEPEKNEGPLFHCDFCDTEVVHKLAQMFLPGLACACVDNTTGGPFKTPGSVAVDLRKEMIEFVTQKSESFVAESVILEGGPDGGALEHPFDIICYFVDEFVSSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWPLDRRETLAKTLIKNVDVKSSFHCSMSFKSARDLANHADDGCNFRPVICRNEGCDARFSAGHLKEHDSACDFKIVPCEQKCTDSILRREMDRHCITVCPMKLVNCPFYAVGCRSAIAQSMIRKHCSDDIESHLLLMLKGIHQEASGEDLKRRVEQILQASSRSKLAEARDVRSYKNIVKDLEVKLGPLEVIAKEKTSAETVAENEDSEDNRTKTKDKEQHTQTLNSLDKAEVSAILEKTCAGNAVNKVDSEHKENGKQG* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1434 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 287 IPR013083 -
Gso2g1434 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 225 IPR013083 -
Gso2g1434 416 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
Gso2g1434 416 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 368 - -
Gso2g1434 416 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 368 IPR043211 -
Gso2g1434 416 MobiDBLite consensus disorder prediction 354 381 - -
Gso2g1434 416 SUPERFAMILY TRAF domain-like 204 284 - -
Gso2g1434 416 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Gso2g1434 416 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1434 Gso-Chr2 27539035 27542089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g1434 zf-TRAF 2.2e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1434 - - gmx:100802183 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1713 19 46016900 46021165 Gso2g1434 2 27539035 27542089 PCT
Gso3g1743 3 43253464 43258890 Gso2g1434 2 27539035 27542089 PCT
Gso2g1434 2 27539035 27542089 Gso19g1713 19 46016900 46021165 PCT
Gso2g1434 2 27539035 27542089 Gso3g1743 3 43253464 43258890 PCT