Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1406 ATGTACAGCAGTGGTGGCGCTGAAGCCGAATCGGAATCTGAATCTGAGCGCAATAGAATGGGTGATGATAAGGAAGAACAGGGCTCCTCGTTCAAGAGCTGGGCCAAACAAACGGAGGAGAGTTATCAGCTGCAGCTCGCTCTTGCTCTTCGTCTTTCTTCTCATTCAGCTTCTTCTTCGGATCACCCCTCTTCTTCGGCCCAGACGCTCACGCACCGGTTTTGGGTAGATGGTTGTTTGCAATACTCTGATAAAATTATAGATGGATTCTACTTAATCCATGGGATGGATGTATATACATGGACTATAAGTACTGATCTGCAGAATGTTGGTATGATTCCGTCATTTGAATCACTGATGTCAATTGAACCTAGCGATGACTTGTCAATCCTAGTGGTTGCTGTTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAATAGGGTAGCAAGTCTTTCAAATAACTGGATTACCACGAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTGCAATAGGATGGGGGGAGGATCTTTAACTGAGGAAAATTTAGGTACACGCTGGAAGGAATGCACCCAACTTCTTAAAAGCTGCCTGCATTCCGTCATTCTTCCAATTGGAAGCTTACCCATTGGCCTTTGTGTCCATCGAGCTTTGCTGTTTAAAGTGTTGGCTGACTTAATCAATCTACCATGCCGTATTGCAAAGGGCTGCAAGTATTGTAGGAAGGATGTGGGTGCCTCATGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTTGGAAGACCTGGGGCAACATGCCAGCCTGATTCTTCACTGAATTCTGCATCTTCAATGTTGGTCCCTTCACCATTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACACTAGCCCAATTGTATTTCTTGGACAGTGAAGCACTGCATCTTGTATTTGATACCACATCAGGACCTGCTGTTAATCATAGTGGCAGAATGGATCTACAGAAAACTGAAGCTCTGGGTGCAAATTATGCGGGTGGGAACAGCCATCTGATTGCTTTGATTCCTGGTGCAGAGGAATATGAGTCTTTCAATGAAGCAAACCAGTCAATAATGGATTACCCAAGTCATGAAGTTGATCTTGACAAGGAGGATCTGGATATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACCGTCCTTCGTGCGGACTGGCGCGGTTCTGATGTTGCTGTGAAGATTCTTAAAGTGCAGGGTTTTGATCCTGGGCGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTCCGGCATCCAAACATTGTACTTTTGATGGGTGCAGTTATTCAACCCCCGAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGTTTGTATGAACTTCTGCACATGCCCAATGTTGGATCATCACTTAGTGAAAAGCGTCGTTTAAGTATGGCTTATGATGTTGCAAGCGGAATGAATTATCTTCATCAAATGAGACCTCCTATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGATTTTGGCCTTTCACGTACAAAGGCAAACACATTTCTTTCATCTAAAACCGCTGCCGGAACTCCTGAATGGATGGCACCTGAAGTCATTCGAGGAGAACTGTCAAGCGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTGCAACAGCCATGGAGACAATTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAGATTCCAGGGCATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGGCCACGGAACACTGGAGACGACCTTCTTTCTCCTATGTTATGAAATGTTTGCAGCAAATAATTGCTGATGCTAAAGGGTGA 1983 0.4337 MYSSGGAEAESESESERNRMGDDKEEQGSSFKSWAKQTEESYQLQLALALRLSSHSASSSDHPSSSAQTLTHRFWVDGCLQYSDKIIDGFYLIHGMDVYTWTISTDLQNVGMIPSFESLMSIEPSDDLSILVVAVDKSRDPGLRELQNRVASLSNNWITTKDATDQLANLVCNRMGGGSLTEENLGTRWKECTQLLKSCLHSVILPIGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDVGASCIVQFGSDREYMIDLVGRPGATCQPDSSLNSASSMLVPSPLCHPKFKPVETAEYTKTLAQLYFLDSEALHLVFDTTSGPAVNHSGRMDLQKTEALGANYAGGNSHLIALIPGAEEYESFNEANQSIMDYPSHEVDLDKEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSEKRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSSEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPGHVNPQVAALIELCWATEHWRRPSFSYVMKCLQQIIADAKG* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1406 660 Gene3D Transferase(Phosphotransferase) domain 1 476 659 - -
Gso2g1406 660 PRINTS Tyrosine kinase catalytic domain signature 471 484 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 PRINTS Tyrosine kinase catalytic domain signature 512 530 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 PRINTS Tyrosine kinase catalytic domain signature 559 569 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 PRINTS Tyrosine kinase catalytic domain signature 578 600 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 PRINTS Tyrosine kinase catalytic domain signature 622 644 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 SMART serkin_6 397 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1406 660 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 341 - -
Gso2g1406 660 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 370 658 - -
Gso2g1406 660 Gene3D Phosphorylase Kinase; domain 1 390 475 - -
Gso2g1406 660 CDD STKc_MAP3K-like 403 649 - -
Gso2g1406 660 Pfam Protein tyrosine and serine/threonine kinase 398 651 IPR001245 GO:0004672|GO:0006468
Gso2g1406 660 MobiDBLite consensus disorder prediction 10 30 - -
Gso2g1406 660 MobiDBLite consensus disorder prediction 1 36 - -
Gso2g1406 660 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 23 341 - -
Gso2g1406 660 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 370 658 - -
Gso2g1406 660 ProSiteProfiles Protein kinase domain profile. 397 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1406 660 ProSitePatterns Protein kinases ATP-binding region signature. 403 424 IPR017441 GO:0005524
Gso2g1406 660 Pfam Ethylene-responsive protein kinase Le-CTR1 67 270 - -
Gso2g1406 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Gso2g1406 660 SUPERFAMILY Protein kinase-like (PK-like) 377 651 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1406 Gso-Chr2 26307746 26340274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1406 34 658 MAP Kinase Kinase Kinase AT5G03730 57.798 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso2g1406 PK_Tyr_Ser-Thr 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1406 K14510 - gmx:100807496 1279.23