Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1391 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCTGCATATTTAGAGGCACAACAGATTAAAGCAAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTGCAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGAGGATGAAGCACTCCAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAACTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACACCTCAGGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGATTGAATCCGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTCTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCGCAGCAACAACAACAACAGATCCTTGCACAGGTTCGGGCACAAGGAAATATTGGCAATTCACCTGCTTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCTATCAATTGCAAATGATGGATCAATAGGCTCTCCAATTCAATCTACTTCATCTAAGATCAACATGGCACAGATCCAACAATCCACTTCCCAGCAACAACAAGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCCACTCATACTCCCGGTGATGGAGTTGCTATGACGGGTAACTTGCAGAATGTAGCTGGTATATCCAAAGGTTTGATCATGTATGGTACTGATGGAGTGGGCTGTCTTGCATCTTCAACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGACAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTTGATGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTCCAGGTTGTTCTGTGGAACATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTCCCTTTACATACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAGCTTTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTCCACACGTATTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCTGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATACACACATTACAGGGACATTCTGCAGAGGTACGCTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAATGCATTCATGAACTTACTTCCAGTGGAAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATCGGAGGATACCAGTCATTGGAATTATGGAACATGGCTGAGAATAAATGTATGACAGTGTCAGCAGCTCACGAGTGTGTGATATCTGCTCTAGCACATTCACCCGTGACAAGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATCTGGAAATAA 2370 0.4401 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVNAITAEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTATLQQIQARTQQTPQDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIANAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQILAQVRAQGNIGNSPAYGDMDPQRLRGLARGSLNAKDGLSIANDGSIGSPIQSTSSKINMAQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGISKGLIMYGTDGVGCLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFDEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVQVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPKKTELFCSCDNNNEIRFWSISQYSSTRIFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQIHTLQGHSAEVRCVCWDTNGDYLASVSQESVKVWSLASGECIHELTSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTVSAAHECVISALAHSPVTRMVASASHDKSVKIWK* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1391 789 Gene3D - 484 640 IPR015943 GO:0005515
Gso2g1391 789 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 789 - -
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 789 IPR001680 GO:0005515
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
Gso2g1391 789 SMART WD40_4 542 581 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 498 539 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 585 625 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 708 747 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 667 705 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 628 664 IPR001680 GO:0005515
Gso2g1391 789 SMART WD40_4 750 789 IPR001680 GO:0005515
Gso2g1391 789 Pfam LisH 10 36 IPR006594 GO:0005515
Gso2g1391 789 MobiDBLite consensus disorder prediction 333 414 - -
Gso2g1391 789 Coils Coil 87 107 - -
Gso2g1391 789 SMART Lish 8 40 IPR006594 GO:0005515
Gso2g1391 789 Pfam WD domain, G-beta repeat 548 581 IPR001680 GO:0005515
Gso2g1391 789 Pfam WD domain, G-beta repeat 588 625 IPR001680 GO:0005515
Gso2g1391 789 Pfam WD domain, G-beta repeat 753 789 IPR001680 GO:0005515
Gso2g1391 789 Pfam WD domain, G-beta repeat 510 535 IPR001680 GO:0005515
Gso2g1391 789 Pfam WD domain, G-beta repeat 670 705 IPR001680 GO:0005515
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 674 714 IPR001680 GO:0005515
Gso2g1391 789 CDD WD40 501 789 - -
Gso2g1391 789 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 789 IPR044716 GO:0003714
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 789 - -
Gso2g1391 789 SUPERFAMILY WD40 repeat-like 500 789 IPR036322 GO:0005515
Gso2g1391 789 Gene3D - 641 789 IPR015943 GO:0005515
Gso2g1391 789 MobiDBLite consensus disorder prediction 327 414 - -
Gso2g1391 789 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Gso2g1391 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1391 Gso-Chr2 25312019 25337478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1391 587 788 Miscellaneous Gene Families AT5G08390 23.301 1.02e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso2g1391 WD40 0.0021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1391 - - gmx:100790180 1483.77