Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1376 ATGGCGAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAGACGCTTAAGCTTACTGTTAGGATCACCAATCTTTGGTTCGTTGGGACTCCCAACAAGTATGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGATAATTGCACTTATGTTATGCATAATTTCAAAGTTGTCAAGAATGATGGTCAATTTAGAGTGTGCAAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTGTGTCTGGCCTGTTGGTTGGAGAGTGGTCTTTCGGCATGTTTCATCAAAAAATACTAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTACTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGAGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCGCAGGGAAGTTATCTAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCCAGTTTTGCTACCTGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCTTGCGTTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGCGGATGTGGCAAGGATAATGATCAGCCTGTTCTGAGGTATAGAGTTGAAGTCATGGTTACCCAAAACAATGAGAGTAACAAGTTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGCGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTTAGGATTCAATCAAAATTCAAAAATGCAGTTGTTCTTAGATACTCAAATGACCTAGATTTGATCAATGTTATTCTCGAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATAATACTACGCATCCTGAATGTCAATCTCTGTCTGTCATAGCTGACCATGATCCGGTTGCCGGATTGCCTTTAACGCCCAAAAAACGGATGTCATCTGATGAAGTTGATGATGAGTTAGGGAGCTTGCAAATTTTCCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAAGAGCCAATTTAGCTGA 1401 0.3926 MARIPDKIRSIDGSKETLKLTVRITNLWFVGTPNKYEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKDNCTYVMHNFKVVKNDGQFRVCKHEYKLFFIGVTVVREADLHELPFKEFRFVEFANVVAGNCVWPVGWRVVFRHVSSKNTRVVFRMKDLSGEILSCTLWENYCTQFLSYLNERGDDEPMVIILTHARIKDAQGSYLASVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSPVLLPVGTISKIVMDNHSWCYPACVQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEVMVTQNNESNKFLLWDRECAELIGETADDANRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSKFKNAVVLRYSNDLDLINVILEMLPDSEACSKIDPSNVDCNNTTHPECQSLSVIADHDPVAGLPLTPKKRMSSDEVDDELGSLQIFPAQLSSNKLTRHSHKSQFS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1376 466 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Gso2g1376 466 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 342 - -
Gso2g1376 466 SUPERFAMILY Nucleic acid-binding proteins 148 232 IPR012340 -
Gso2g1376 466 Gene3D - 212 379 IPR012340 -
Gso2g1376 466 SUPERFAMILY Nucleic acid-binding proteins 246 363 IPR012340 -
Gso2g1376 466 Gene3D - 6 106 IPR012340 -
Gso2g1376 466 CDD RPA1_DBD_B_like 134 232 - -
Gso2g1376 466 CDD RPA1_DBD_C 222 359 IPR013955 -
Gso2g1376 466 PANTHER REPLICATION FACTOR A 1, RFA1 11 342 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso2g1376 466 SUPERFAMILY Nucleic acid-binding proteins 8 106 IPR012340 -
Gso2g1376 466 Pfam Replication factor-A C terminal domain 248 362 IPR013955 -
Gso2g1376 466 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1376 Gso-Chr2 22495568 22498087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1376 1 337 Core DNA Replication Machinery Family AT5G08020 22.727 5.45e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1376 - - gmx:102660767 952.97