Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso2g1348 | ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA | 930 | 0.4495 | MSNSRNTHWCYSCRRPVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE* | 310 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso2g1348 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - | |
Gso2g1348 | 309 | MobiDBLite | consensus disorder prediction | 273 | 294 | - | - | |
Gso2g1348 | 309 | MobiDBLite | consensus disorder prediction | 234 | 260 | - | - | |
Gso2g1348 | 309 | Pfam | Ring finger domain | 185 | 227 | IPR001841 | - | |
Gso2g1348 | 309 | SMART | ring_2 | 186 | 226 | IPR001841 | - | |
Gso2g1348 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 232 | IPR013083 | - | |
Gso2g1348 | 309 | SUPERFAMILY | RING/U-box | 166 | 233 | - | - | |
Gso2g1348 | 309 | CDD | RING-H2_RNF126_like | 186 | 227 | - | - | |
Gso2g1348 | 309 | MobiDBLite | consensus disorder prediction | 273 | 309 | - | - | |
Gso2g1348 | 309 | Pfam | zinc-ribbon | 6 | 37 | IPR039525 | GO:0061630 | |
Gso2g1348 | 309 | MobiDBLite | consensus disorder prediction | 234 | 261 | - | - | |
Gso2g1348 | 309 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 3 | 288 | - | - | |
Gso2g1348 | 309 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso2g1348 | Gso-Chr2 | 20750288 | 20752920 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso2g1348 | 121 | 230 | C3H Transcription Factor Family | AT5G01980 | 43.860 | 2.63e-26 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso2g1348 | K11982 | - | gmx:100787523 | 632.869 |