Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1348 ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 930 0.4495 MSNSRNTHWCYSCRRPVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1348 309 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Gso2g1348 309 MobiDBLite consensus disorder prediction 273 294 - -
Gso2g1348 309 MobiDBLite consensus disorder prediction 234 260 - -
Gso2g1348 309 Pfam Ring finger domain 185 227 IPR001841 -
Gso2g1348 309 SMART ring_2 186 226 IPR001841 -
Gso2g1348 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Gso2g1348 309 SUPERFAMILY RING/U-box 166 233 - -
Gso2g1348 309 CDD RING-H2_RNF126_like 186 227 - -
Gso2g1348 309 MobiDBLite consensus disorder prediction 273 309 - -
Gso2g1348 309 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Gso2g1348 309 MobiDBLite consensus disorder prediction 234 261 - -
Gso2g1348 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 288 - -
Gso2g1348 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1348 Gso-Chr2 20750288 20752920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1348 121 230 C3H Transcription Factor Family AT5G01980 43.860 2.63e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1348 K11982 - gmx:100787523 632.869