LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g1321	ATGTTGAACTTCTCTTCTCCAAAGTCAGAGTCTTTGTTGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAACAAGTTCGTGGTTCTACATCTACAAAAAGATCTCATGCCGCAGAAGTCCATAATCTCTCCGAGAGGAGGCGTCGAGATAGAATTAATGAGAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGGCAAAGCTTCAATGCTGGATGAACCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATCATACCTATGATATTTCCTGGAATCCAGCAGTATATGCCACCAATGGGAATGGCGATTGGGATGGGTATGGGCATGGGCATGGAAATGCGAACATACACTTAA	396	0.4268	MLNFSSPKSESLLDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKALQELIPRCNKSGKASMLDEPIEYLKSLQLQVQMMSMGCGIIPMIFPGIQQYMPPMGMAIGMGMGMGMEMRTYT*	132

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g1321	131	Gene3D	-	31	94	IPR036638	GO:0046983
	Gso2g1321	131	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	34	99	IPR036638	GO:0046983
	Gso2g1321	131	SMART	finulus	42	91	IPR011598	GO:0046983
	Gso2g1321	131	PANTHER	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	14	126	-	-
	Gso2g1321	131	Coils	Coil	42	62	-	-
	Gso2g1321	131	CDD	bHLH_AtPIF_like	37	99	-	-
	Gso2g1321	131	Pfam	Helix-loop-helix DNA-binding domain	40	86	IPR011598	GO:0046983
	Gso2g1321	131	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	36	85	IPR011598	GO:0046983
	Gso2g1321	131	PANTHER	TRANSCRIPTION FACTOR PIF1-RELATED	14	126	IPR031066	-
	Gso2g1321	131	MobiDBLite	consensus disorder prediction	1	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g1321	Gso-Chr2	17943508	17947506	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g1321	21	91	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G20180	80.556	1.48e-33	118

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Gso2g1321		HLH	2.7e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso2g1321	-		-	gmx:102665366	218.394