Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1306 ATGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGATATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTTGAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGATTGAGTCGATGTTTGGGATGTGAGAGGGTGGAATTGGCTGTGCCAGTGGATGATGATGATGATGGTGGTGGTGAAGGTTGCAAGAGTGGCTTTGATGGGGATGGTGACGAGTTCAAGTTTGAAGCGGGTGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGAGATTATCCTGGAGAGATGAACACGAACCAAGTTAGCAATTACAGCTATGGGGAAGCTGAGGCATTGACTGATGAGATTGAAAAAGAGTCTCAATACGTTGAGGAGGTGTTCAGAATCAAGGATATTTTCCTTAACTACGAAGAAGAGTCTGATTCAGTGTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTCTGAAGGCAACTGAAATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGAGACATTTGTCAACTTGCACGGACTCTTATTGATGGCTGGAAACAAATGGTGGATGAGTGGGTCAAGGATACCACAGCTATTGCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCGATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCAACACAGTGGGGAATTCATCAAGAACCATGAACATGGAAGAAGACCATCTCTGAACAGTCAAAATACAGCAAAGAGGAAACCTCAGGCATCAAATGAGGCAAACATCATTGCCAAGGACAGTAAGGGTCAGCAAGCAAAGAAAAACGAGGCTGCTGTGAGACCAAATAAATCAGTAATCGCTGATTCTGGCCCTAGCAGACCACCTAAATCAACCATGCAGAAGAAAGGCAACATTGAACCAAAGATGCAACAAAATATCGTGAAGAGTGCTATCCCAAGAAATCCTCACATTCATCAGCTAGATAAACCCAAGTGTTCAGACGATGCTGCTGTGCACGTAAAGTTAGAAGCCACTAAGAGAAAACTTCAGGAGCGTTATCAACAAGCTGAAAAGGCTAAGAGGCAGCGGACGGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGGATTGGCCATCGAAATCCACATGTGAAACCCGGAAATCACAAGAGGCAATGGGGTCATGGACGAAGATAG 1356 0.4491 MRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSRCLGCERVELAVPVDDDDDGGGEGCKSGFDGDGDEFKFEAGASKESKVNSARDYPGEMNTNQVSNYSYGEAEALTDEIEKESQYVEEVFRIKDIFLNYEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKQMVDEWVKDTTAIAEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPQHSGEFIKNHEHGRRPSLNSQNTAKRKPQASNEANIIAKDSKGQQAKKNEAAVRPNKSVIADSGPSRPPKSTMQKKGNIEPKMQQNIVKSAIPRNPHIHQLDKPKCSDDAAVHVKLEATKRKLQERYQQAEKAKRQRTVQVMELHDLPKQGIGHRNPHVKPGNHKRQWGHGRR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1306 451 MobiDBLite consensus disorder prediction 436 451 - -
Gso2g1306 451 Pfam TFIIS helical bundle-like domain 168 216 IPR017923 -
Gso2g1306 451 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 228 IPR035441 -
Gso2g1306 451 CDD TFIIS_I 144 217 - -
Gso2g1306 451 MobiDBLite consensus disorder prediction 276 293 - -
Gso2g1306 451 ProSiteProfiles TFIIS N-terminal domain profile. 144 219 IPR017923 -
Gso2g1306 451 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 450 - -
Gso2g1306 451 MobiDBLite consensus disorder prediction 227 253 - -
Gso2g1306 451 MobiDBLite consensus disorder prediction 294 317 - -
Gso2g1306 451 MobiDBLite consensus disorder prediction 266 355 - -
Gso2g1306 451 SMART TFS2_5 143 218 IPR003617 GO:0005634
Gso2g1306 451 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 450 IPR044805 -
Gso2g1306 451 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 141 229 IPR035441 -
Gso2g1306 451 MobiDBLite consensus disorder prediction 423 451 - -
Gso2g1306 451 Coils Coil 391 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1306 Gso-Chr2 17036447 17041449 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso2g1306 Med26 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1306 - - gmx:100775579 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1071 19 38568778 38573106 Gso2g1306 2 17036447 17041449 PCT
Gso3g1072 3 35685627 35689909 Gso2g1306 2 17036447 17041449 PCT
Gso2g1306 2 17036447 17041449 Gso19g1071 19 38568778 38573106 PCT
Gso2g1306 2 17036447 17041449 Gso3g1072 3 35685627 35689909 PCT