Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1301 ATGGGTTTTCTCCTTGCTGCAAATGGTCTTTTGGTTCTTTACATTGCCATCAACTTGTTCAAGATTTACTATGGTGATGATTGGGGTGGTCTTTTTGAGGCCATCACTAGTTATGGTCTTGGTGGGTCTTCTATGGCTTTGTTTGGAAGAGTTGGTGGAGGTATCTATACTAAGGCTGCTAATGTTCGTGCTGATCTTGTTGGAAAAGTTGAAAGAAACATCCCCGAAGACGATCTAAGAAATCTAGCTGTTTATAGAAGTGCCTTGGGGTTGGTGCGTTCTATGCTACCATTACCACACCTTAAAGTTGGATATTTAACTGCACCTCCTGTGGGGACATCGATTGCACCTCATAATGACTGGAAGCGATCAAATTTCCTTTTGGATCACGAAAAGCTTCAACAGCCTGGCCCGAGGGAACATGTACTTCAGTGCTTCATTAGGCGCAACAATGCCTCACAGACATATTATATGTTTCTCAGTTTATCTAGTGCACTAGTAGCTGATGATGGCAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTTCGTTGATGCAGATGATATGTCCAGAGAAAGCAATGCCTCTGTTGGGAAATTGAGGTCACATCATCGTACGAAAACATTCTTCATCATATGGAGAACATATCAATTGGTAATTTCGTCTTCACAACTCGAGAGAGTGGAAACTACTTAG 720 0.425 MGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITSYGLGGSSMALFGRVGGGIYTKAANVRADLVGKVERNIPEDDLRNLAVYRSALGLVRSMLPLPHLKVGYLTAPPVGTSIAPHNDWKRSNFLLDHEKLQQPGPREHVLQCFIRRNNASQTYYMFLSLSSALVADDGKFLLAARKFRRPTCTDYIIFVDADDMSRESNASVGKLRSHHRTKTFFIIWRTYQLVISSSQLERVETT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1301 239 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 90 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Gso2g1301 239 Gene3D Tubby Protein; Chain A 128 237 IPR025659 -
Gso2g1301 239 Pfam Tub family 133 222 IPR000007 -
Gso2g1301 239 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP 1 90 - -
Gso2g1301 239 Pfam Inorganic H+ pyrophosphatase 1 84 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Gso2g1301 239 SUPERFAMILY Tubby C-terminal domain-like 132 219 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1301 Gso-Chr2 16785804 16796614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1301 1 90 Primary Pumps ATPases AT1G15690 83.333 1.67e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso2g1301 Tub 9.6e-24 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1301 K23025 - gsj:114390952 423.32