Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1283 ATGGTCGAAACCAGACGCGGCGCCTCTTCTTCCAAGTGTTCTCTCTCTTCTCCTTCTGCGCCCAACACCAAACGATCCAAGGTGTCCAAGGATTCCTTTGTGGCGGCTCCGGTCAACAAATCTGGGGAACCGGAGCTACGGCCCTCTGATCTGCCAGATACGGCGTCGTTGAAGGCCGTGGATGTTTGTGACGCGGTGTTGCCCGATAAGTCTCCTTCTGAAGGCGAGGCTTTGGTGCCTCCACGGTGTGCAGGTGAAACTGCGGAGAAATCGAAGGTGGCTGGTCTTCCCCCAAGGAGCGTGAAGAAACGTGCTGCGAAATCGTGCCCCAAGACTGCGTGGGGAAAGCTCCTCTCTCAGTGTTCTAAGAATCCTCATGTGTGCATGACTGAACCTATCTTCACCGTTGGTCAAGGTCAACATTGTAATTTATGGCTTAAAGATCCCACCATTGGTAGTGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAAGTTCATCGGGTGCATTACTGGAAATCACAGGGAGCAAAGGTTCTATTCACGTTAATGGGAAGACTTATAGAAAGAATGCCTGTCTAATTTTAAGTGGAGGTGATGAGGTTGTCTTTGGTTCTTCTGCCAAGTATGCTTATATCTTTCAGCAGCTGACGAATAGTATCATTAGTACTGCTGATATAGCTTCTTCTGTGAGTATCTTGGAAGCCCAGAGTGCTCCAATAAATGGAATGCAAGTTGAAGCCAGATCTGGAGACCTTTCTGCTGTTGCTGAAGCATCTATATTGGCATCTTTATCTAATAATATTTGTAAAGAATTATCTCTCCTACCACCTGCTGCTAAAACTGGCAAGAATGTGCAGCAGAACACTGACATTTCATCACTACATTCTGGCTGCGGGGATGATATCACAGACAATGAAATGAGTGATACCACCAATAATGATGAACCAGCTGGAGATTTTTCTGCTGATAAAACTGTTCTTGGATCCTCTACCACTGTTAACGAAAATCCTAACCTTGGCTCAGCAGAAGTCGATACCAATATTGATGCAGATGTTGGGAAGATGACTACTGCTACATATGAGTTGAGGCCATTACTGCGCATGCTTACTGGATCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGGGCAAAGGGAATTAAGAGAACTTCTTAAAGATGTTGATACCCCAACAGTATTGGCATCAACCAAGCGACTAGCATTTAAGGACAGTTTACAACAGAGAATTCTCAAAGCTGAGAAGATTGATGTCTCATTTGAAACTTTCCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCAAAGGCTTTGGAAAATATGCTTCAGACCTCCCATCAGTGTCTCCACGAATAGTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTGGATCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCTGGGGCTGAAAAACCATCTGTGTTTTCTAGGAAGAGAAATTTCCAGACTGCCATGTTACAGCATAAAAAACCAGCCTCTAGTGTTAATGCTGAAATTATTGGTGGACCCATGCTAATTTCTAGTGCATCATCGAAAGGCGCTACTCTTAGAAAGGGTGATCGAGTAAAATTTATTGGTAGCTTTCCTTCGGCTGTCTCATCACTACCAAATTATATTTCAAGGGGACCAAGTTATGGCTCCCGGGGCAAAGTTCTCCTAGCTTTTGAAGATAACGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGAAATGATCTTGGTGGCCTTTGCGAAGATGACCATGGGTTCTTCTGTTCTGCAAATCATTTACTACAAGTAGACGGCTCTGGAGGGGATGATCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCTAATCAGAGTAAAAGTGGTGCACTCGTGTTGTTCATTAAAGATATAGGGAAGGCAATGATTGGCAACTACGAAATTTTAAAAAGTAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAGTTGGTTCTCACACCCAGTTGGATAATCAAAAGGAGAAGGCTCAACCTGGCAGTCTTCTGTTTACCAAGTTTGGAAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGAAGCAAAGAAACCTCAAAAGTTATGAAGCAACTTAATCGCCTTTTTCCAAACAAAGTGACCATACAGTTGCCTCAGGACGAGGCTTTACTCTCTGACTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTTCTCAACAGAATTGGATTGGATTGCCCTGACCTTGAGACTCTCTGCATCAAAGACCACACCCTAACGACTGAGAGTGTGGAGAAGATCATTGGATGGGCTTTAAGTTACCATTTTATGCATTCATCTGAAGCTTCAATCAGAGATTCTAAGCTTGTAATATCTGCAGAAAGCATTAAGTATGGACATAAAATTCTACAGGGCATTCAAAATGAGAACAAGAACATGAAAAAATCACTTAAGGACGTGGTTACTGAGAATGAATTTGAGAAAAAACTACTTACTGATGTTATTCCACCGACTGATATTGGGGTCACATTTGACGATATTGGAGCTTTAGAAAATGTTAAGGAAACCTTGAAGGAATTGGTCATGCTTCCTCTTCAAAGGCCTGAATTGTTTGGCAAAGGACAGCTGGCCAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTGGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACATCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAACATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGAGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGATTGATGGTTAATTTGCCAGATGCTCCAAATAGAGGAAAAATTGTCAGAGTTATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGATTTTGAAGCAATAGCAAATATGACTGATGGATATTCAGGAAGTGACCTAAAGAATCTCTGTGTCACAGCAGCTCAATGTCCAATAAGACAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACCAACCTTTACCTCAGTTGTGTAGTAGTACTGACGTTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTTTGTGCTAGTGTGTCATCGGAGTCAACAAATATGAGTGAACTACTCCAATGGAACGACCTTTACGGAGAAGGTGGATCAAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3678 0.4187 MVETRRGASSSKCSLSSPSAPNTKRSKVSKDSFVAAPVNKSGEPELRPSDLPDTASLKAVDVCDAVLPDKSPSEGEALVPPRCAGETAEKSKVAGLPPRSVKKRAAKSCPKTAWGKLLSQCSKNPHVCMTEPIFTVGQGQHCNLWLKDPTIGSVLCKLSHIERGSSSGALLEITGSKGSIHVNGKTYRKNACLILSGGDEVVFGSSAKYAYIFQQLTNSIISTADIASSVSILEAQSAPINGMQVEARSGDLSAVAEASILASLSNNICKELSLLPPAAKTGKNVQQNTDISSLHSGCGDDITDNEMSDTTNNDEPAGDFSADKTVLGSSTTVNENPNLGSAEVDTNIDADVGKMTTATYELRPLLRMLTGSCPEFDLSGSISKILEGQRELRELLKDVDTPTVLASTKRLAFKDSLQQRILKAEKIDVSFETFPYYLSDTTKNVLIASTFIHLKCKGFGKYASDLPSVSPRIVLSGPAGSEIYQETLSKALVKHFGARLLIVDSLSLPGGSPSKEVDSAKESSGAEKPSVFSRKRNFQTAMLQHKKPASSVNAEIIGGPMLISSASSKGATLRKGDRVKFIGSFPSAVSSLPNYISRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDHGFFCSANHLLQVDGSGGDDLDKVAINEIFEVASNQSKSGALVLFIKDIGKAMIGNYEILKSKFESLPPNVVVVGSHTQLDNQKEKAQPGSLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETSKVMKQLNRLFPNKVTIQLPQDEALLSDWKQQLDRDIETMKAQSNVVSIRLVLNRIGLDCPDLETLCIKDHTLTTESVEKIIGWALSYHFMHSSEASIRDSKLVISAESIKYGHKILQGIQNENKNMKKSLKDVVTENEFEKKLLTDVIPPTDIGVTFDDIGALENVKETLKELVMLPLQRPELFGKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRGKIVRVILAKEDLAPDVDFEAIANMTDGYSGSDLKNLCVTAAQCPIRQILEKEKKERSLALAENQPLPQLCSSTDVRPLKMEDFRYAHEQVCASVSSESTNMSELLQWNDLYGEGGSRKMRSLSYFM* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1283 1225 Gene3D - 919 1199 IPR027417 -
Gso2g1283 1225 Gene3D - 113 221 - -
Gso2g1283 1225 Pfam AAA+ lid domain 1114 1149 IPR041569 -
Gso2g1283 1225 Gene3D - 1093 1187 - -
Gso2g1283 1225 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1225 - -
Gso2g1283 1225 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1225 - -
Gso2g1283 1225 SMART AAA_5 957 1094 IPR003593 -
Gso2g1283 1225 CDD AAA 959 1092 - -
Gso2g1283 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1198 IPR027417 -
Gso2g1283 1225 Pfam ATPase family associated with various cellular activities (AAA) 961 1090 IPR003959 GO:0005524|GO:0016887
Gso2g1283 1225 MobiDBLite consensus disorder prediction 1 53 - -
Gso2g1283 1225 ProSitePatterns AAA-protein family signature. 1064 1083 IPR003960 GO:0005524|GO:0016887
Gso2g1283 1225 Coils Coil 881 901 - -
Gso2g1283 1225 MobiDBLite consensus disorder prediction 511 532 - -
Gso2g1283 1225 SUPERFAMILY SMAD/FHA domain 114 209 IPR008984 GO:0005515
Gso2g1283 1225 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1283 Gso-Chr2 15879406 15899323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1283 956 1161 Calmodulin-binding Proteins AT3G56690 35.714 4.19e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1283 - - gmx:100800938 2399.78