Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1278 ATGGGTGACAACAACATAGGCAAAGTCTTAGAGAGAGAAGGCTTTAAGTACAACTTCACGGCAGCTGCAAGTGACACCTCTGCACAAGATGAGGTGATTAAAGAGCAAGATCGGTTGCTTCCAATAGCAAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCTAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTGAATGGCGACGATATTTGCTGGGCCCTTGCTACCCTAGGGTTTGATGACTACTCTGAGCCACTTAAAAGGTACTTGCATAAGTATAGGGAGTTCGAAGGGGAGAGAGCAAATCAAAATAAGGGTAACAACAACACTTATGAAAACAACATTGCAAACATATAA 444 0.4437 MGDNNIGKVLEREGFKYNFTAAASDTSAQDEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLHKYREFEGERANQNKGNNNTYENNIANI* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1278 147 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 17 141 - -
Gso2g1278 147 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Gso2g1278 147 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Gso2g1278 147 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Gso2g1278 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso2g1278 147 SUPERFAMILY Histone-fold 36 138 IPR009072 GO:0046982
Gso2g1278 147 Gene3D Histone, subunit A 26 146 IPR009072 GO:0046982
Gso2g1278 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Gso2g1278 147 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1278 Gso-Chr2 15831062 15831864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1278 32 133 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.353 3.27e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso2g1278 CBFD_NFYB_HMF 8.4e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1278 K08065 - gmx:100817274 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1278 2 15831062 15831864 Gso2g1278 2 15831062 15831864 ECH
Gso2g1278 2 15831062 15831864 Gso10g0176 10 1836170 1836964 GST