Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1277 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCACAGCAAACACTGGTGAAGAAGTTCATCAAGAAAACAAGCTACAACAACCACTAAACCACCCCCATGGCTCAAGTTCTGGTGTTCGCAACAGCAATAGCTCCACTAATCAACAGCAACAACAAGCAAACAAGAAGAATAGAAACCTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAGGAAGCAATGAAGTGAAGAAAAGGGTTTACGTGTGCCCTGAGCCATCATGCATCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAACATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAGTCTGATTGGAAGGCCCACCAGAAAACATGTGGCACCAGGGAATACAAATGTGACTGTGGAACTATATTTTCCAGAAGAGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACTGAAGAAAATAGCCGAGTAAACCACTTATTAACGAGTGGCATGGCACCAACAACAACCCTGGAAAATGAATTGCCGGATCTTATTGCCACTACAATGCCTCTAAGCGCTAGTTCCAACAACAGTACTGTATCCGAATTCAACAACAACTACGACACTAAGAGCCCACTCCAAGAGCATATTGTCCCAATGCCATTCAAGTCCACTAGCATGGGTGGTGGCATGTTCTCCAACACCACTTTTTCAGCTGGTACACTCTTTGGTGGTCCAAAAAACATGTCTCATCCCTCTTCTTCCACTCTTCAACTCAGCTCCAACAACTCCACTGCTTTCAATTACTTCCAAGACAGCAAAAACGCTTCTGCCTCATCTCACATGTCTGCCACAGCTTTATTGCAGAAAGCAACACAAATGGGTGCCACTGCAAGCAATAACAATAGCATTATTAACTCTCCAACCATGATGCAGAAAAGCTTTGTTAGTGCCATGACTGGTCCTGACCACAACCATATTTCTTCCTATGACCACTTCCATCATCCAAACCCTGATGATCAATCTCACAATATGGCTGGGATTAGTAACGCCGGAGCCTTCACCAACCTGTTTTTTCACAAGGGACAACAAGAAATGTCACTGATATTTGATTCCAACACTAGTGATATGGGAATGTTCGGCCCAATACTGATGAAGAACGTGGAGCAAGAGATTGGTACTGGTTCGAGTTTGGTTCATGACTTCTTGGGCGTTGGGGATGCAACTTCAAGGGTGTATGAACCACAGAAACAACAACAGCAAAGATTGGAGTTAGAAGCATTAACCCACCAGAGGTTGCAGATTATGAATCACTTTCACCACCACCTTCCACATGGGGATTCTGCTACTATGGAGAAATCCATTTGGGACATTTGA 1545 0.4388 MSNISGDEGSFSTANTGEEVHQENKLQQPLNHPHGSSSGVRNSNSSTNQQQQQANKKNRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSNEVKKRVYVCPEPSCIHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENSRVNHLLTSGMAPTTTLENELPDLIATTMPLSASSNNSTVSEFNNNYDTKSPLQEHIVPMPFKSTSMGGGMFSNTTFSAGTLFGGPKNMSHPSSSTLQLSSNNSTAFNYFQDSKNASASSHMSATALLQKATQMGATASNNNSIINSPTMMQKSFVSAMTGPDHNHISSYDHFHHPNPDDQSHNMAGISNAGAFTNLFFHKGQQEMSLIFDSNTSDMGMFGPILMKNVEQEIGTGSSLVHDFLGVGDATSRVYEPQKQQQQRLELEALTHQRLQIMNHFHHHLPHGDSATMEKSIWDI* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1277 514 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Gso2g1277 514 Gene3D Classic Zinc Finger 63 130 - -
Gso2g1277 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Gso2g1277 514 MobiDBLite consensus disorder prediction 1 62 - -
Gso2g1277 514 Gene3D Classic Zinc Finger 140 219 - -
Gso2g1277 514 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Gso2g1277 514 SMART c2h2final6 85 107 IPR013087 -
Gso2g1277 514 SMART c2h2final6 161 181 IPR013087 -
Gso2g1277 514 SMART c2h2final6 126 156 IPR013087 -
Gso2g1277 514 MobiDBLite consensus disorder prediction 1 70 - -
Gso2g1277 514 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gso2g1277 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 496 - -
Gso2g1277 514 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1277 Gso-Chr2 15813316 15817513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1277 43 358 IDZ Gene Family AT3G50700 54.762 1.59e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g1277 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1277 - - gmx:100797943 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1277 2 15813316 15817513 Gso2g1277 2 15813316 15817513 ECH