Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1275 ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCATCGGCATCTTCTCTCATCGATGTGCCAGTCACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGTTGGCTCCTTCAACAACGTCTTCAGACCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTAATGCCCCTCCAAACAGTAGCAGAAGCACCAGACAAAGCGGTGAAATACGTTGA 1416 0.4929 MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPGLQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSDLRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSVSLSDVQLSSQSNAPPNSSRSTRQSGEIR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1275 471 MobiDBLite consensus disorder prediction 447 471 - -
Gso2g1275 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gso2g1275 471 Gene3D - 294 377 - -
Gso2g1275 471 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Gso2g1275 471 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gso2g1275 471 MobiDBLite consensus disorder prediction 417 433 - -
Gso2g1275 471 MobiDBLite consensus disorder prediction 11 27 - -
Gso2g1275 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gso2g1275 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gso2g1275 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Gso2g1275 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 366 IPR000571 GO:0046872
Gso2g1275 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Gso2g1275 471 Gene3D - 127 173 - -
Gso2g1275 471 SUPERFAMILY CCCH zinc finger 343 371 IPR036855 GO:0046872
Gso2g1275 471 Gene3D - 43 123 - -
Gso2g1275 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gso2g1275 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Gso2g1275 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gso2g1275 471 MobiDBLite consensus disorder prediction 397 433 - -
Gso2g1275 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Gso2g1275 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Gso2g1275 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gso2g1275 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Gso2g1275 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gso2g1275 471 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Gso2g1275 471 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g1275 471 MobiDBLite consensus disorder prediction 269 298 - -
Gso2g1275 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Gso2g1275 471 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 18 454 - -
Gso2g1275 471 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Gso2g1275 471 MobiDBLite consensus disorder prediction 269 288 - -
Gso2g1275 471 PANTHER PROTEIN PHOSPHATASE RELATED 18 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1275 Gso-Chr2 15797148 15801182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1275 20 435 C2H2 Transcription Factor Family AT5G18550 51.598 1.23e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g1275 zf-CCCH 2.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1275 - - gmx:100812475 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1275 2 15797148 15801182 Gso2g1275 2 15797148 15801182 ECH