Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1269 ATGATGAATGGTTCTCCAAATTCAAAACAGAGAACATGTGACTATTGCGGGAGCTTCACGGCTCTTCTGTACTGCAGAGCCGATTCTGCGAAGCTTTGTTTCTTCTGTGACCGTAAAGTTCACTTCCCAAACCAGCTTTTCTCGAAGCACAAGCGCGCGCAGCTCTGTGATGCGTGTGGAGATTCCCCTGCCTCGGTGCTCTGTTCTGCAGAAAACTCTGTTCTGTGCCAAAACTGTGATTGCGGAAAGCAAAAACATTTGGCGTCTGAGGCGCACCAACGGAGGCCACTCGAGGGGTTCTCGGGGTGCCCTTCTGTGACTGAGTTGTTAACAATTCTGGGTCTCAGTGAAAAATCTCTGCTTTCAAATGAGGGAACTTCCCAGATTGATGATGACCTTTCGGATTTGCACGTGTGGAGTGCTCCTTCTATTAATGGTCTTGAAGATTTGATCACTACCACAGCTTCTTCTCAAAAGAAACGTAAGGGTGCGTGCGGGAGACACAAAGAAGAGATTCTTAGTCAACTCCGTGAGCTAATAAAGTTGGAGCCCGACTTGATTCATGCTGAACGACAAGGGCAATTTGGAAATTTGCCTACTGATTTTGAACGAGACGTGGAGGCTAATATATTTCCTTCATATGAGGTAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCCTAGAAATCAAATTGTTCCTTCCGATACGTCACCATTGAGAGATTATGGCGATATAGTTTCAGCTGAAGATGGAAGTTTTACGATCACTGTGACTCACGCCAATTTTAACAACCAAGGGAAACCATCAAATTCTTTTAACGCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATACGAGTTGACAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAGAAAAAATCCAGAAGATATGACAAGCACATCAGATATGAATCACGAAAAGTTCGGGCAGAAAACAGGATGAGAATTAAGGGTAGGTTTGTCAGAGATGAAACACAAAAATAA 1023 0.437 MMNGSPNSKQRTCDYCGSFTALLYCRADSAKLCFFCDRKVHFPNQLFSKHKRAQLCDACGDSPASVLCSAENSVLCQNCDCGKQKHLASEAHQRRPLEGFSGCPSVTELLTILGLSEKSLLSNEGTSQIDDDLSDLHVWSAPSINGLEDLITTTASSQKKRKGACGRHKEEILSQLRELIKLEPDLIHAERQGQFGNLPTDFERDVEANIFPSYEVGVFCWHGESSDPRNQIVPSDTSPLRDYGDIVSAEDGSFTITVTHANFNNQGKPSNSFNAENLSPTPKATPYELTSHERDSALLRYREKKKSRRYDKHIRYESRKVRAENRMRIKGRFVRDETQK* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1269 340 SMART bboxneu5 56 97 IPR000315 GO:0008270
Gso2g1269 340 SMART bboxneu5 8 55 IPR000315 GO:0008270
Gso2g1269 340 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Gso2g1269 340 MobiDBLite consensus disorder prediction 267 289 - -
Gso2g1269 340 Pfam CCT motif 294 336 IPR010402 GO:0005515
Gso2g1269 340 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Gso2g1269 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 337 - -
Gso2g1269 340 CDD Bbox1_BBX-like 13 55 - -
Gso2g1269 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 8 337 - -
Gso2g1269 340 ProSiteProfiles Zinc finger B-box type profile. 8 55 IPR000315 GO:0008270
Gso2g1269 340 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1269 Gso-Chr2 15719366 15722347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1269 9 309 C2C2-CO-like Transcription Factor Family AT2G47890 36.624 1.57e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso2g1269 CCT 4.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1269 - - gmx:100796874 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1269 2 15719366 15722347 Gso2g1269 2 15719366 15722347 ECH
Gso2g1269 2 15719366 15722347 Gso10g0186 10 1942905 1945795 GST
Gso19g1736 19 46250044 46253700 Gso2g1269 2 15719366 15722347 PCT
Gso3g1769 3 43492919 43496677 Gso2g1269 2 15719366 15722347 PCT
Gso2g1269 2 15719366 15722347 Gso19g1736 19 46250044 46253700 PCT
Gso2g1269 2 15719366 15722347 Gso3g1769 3 43492919 43496677 PCT