Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1260 ATGGCGGAGGGGAAGGAAGAGAGTAAATCTAGCGAGGAGAGCGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGTCGGAAGACGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGCCACTCGTGCCTCCCGAGGTTGTTGCTTTGTAATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCATGTCATAACAAGAAAACGCTCCCTGGGGCATCTAGTCCGTTACAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATCGGAATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCCAATCTTTTCTCAAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCTTTATTGCTCTTGAAGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACTAGCTCGAAGGGCTCAAAAAACACAGTCCCGAGTTTCTAATGCGCCGCATGCTGATCCTCAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGTTTTCCACCAGTGCAGAATCAACCAGGCTTCCATAATATGAACCAAGCAAATGCAGTGAGGCCTGATCTTGGTCACAGTATGAACCCTAGAAATTATCCTGCGCCTCCTGCAAGTTACATTGGCTCTTACCCTGCTGTTCCAGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAGATTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTCACAACTGCATTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTCGTAGATAAAGTAACAGGAGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGCAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGTAAGATTTACTGA 1197 0.4369 MAEGKEESKSSEESVKLFVGQVPKRMSEDEVLAMFKEFALVDEVNIIRDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSNLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQAFIALEAINGKHTMEGSSVPLVVKWADTEKERLARRAQKTQSRVSNAPHADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRFPPVQNQPGFHNMNQANAVRPDLGHSMNPRNYPAPPASYIGSYPAVPGGNSNSSSSGASKSSSGQIEGPPGANLFIYHIPQEYGDQELTTAFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEAAQAAISTMNGCQLGGKKLKVQLKRDNKQSKIY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1260 398 Gene3D - 2 99 IPR012677 -
Gso2g1260 398 CDD RRM3_CELF1-6 315 387 - -
Gso2g1260 398 SMART rrm1_1 16 92 IPR000504 GO:0003723
Gso2g1260 398 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gso2g1260 398 SMART rrm1_1 314 387 IPR000504 GO:0003723
Gso2g1260 398 MobiDBLite consensus disorder prediction 284 307 - -
Gso2g1260 398 Gene3D - 100 190 IPR012677 -
Gso2g1260 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Gso2g1260 398 PANTHER RNA BINDING PROTEIN 7 289 - -
Gso2g1260 398 PANTHER RNA BINDING PROTEIN 303 385 - -
Gso2g1260 398 SUPERFAMILY RNA-binding domain, RBD 103 393 IPR035979 GO:0003676
Gso2g1260 398 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Gso2g1260 398 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Gso2g1260 398 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Gso2g1260 398 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Gso2g1260 398 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Gso2g1260 398 MobiDBLite consensus disorder prediction 286 307 - -
Gso2g1260 398 CDD RRM1_2_CELF1-6_like 16 92 - -
Gso2g1260 398 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 303 385 - -
Gso2g1260 398 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 289 - -
Gso2g1260 398 Gene3D - 290 397 IPR012677 -
Gso2g1260 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Gso2g1260 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Gso2g1260 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Gso2g1260 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Gso2g1260 398 CDD RRM1_2_CELF1-6_like 104 179 - -
Gso2g1260 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1260 Gso-Chr2 15628980 15633349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1260 14 397 Eukaryotic Initiation Factors Gene Family AT4G34110 23.367 1.33e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1260 K13207 - gmx:100807662 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1260 2 15628980 15633349 Gso2g1260 2 15628980 15633349 ECH
Gso2g1260 2 15628980 15633349 Gso10g0193 10 2019405 2023404 GST
Gso19g1725 19 46136461 46141172 Gso2g1260 2 15628980 15633349 PCT
Gso3g1758 3 43385976 43390892 Gso2g1260 2 15628980 15633349 PCT
Gso2g1260 2 15628980 15633349 Gso19g1725 19 46136461 46141172 PCT
Gso2g1260 2 15628980 15633349 Gso3g1758 3 43385976 43390892 PCT