Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1249 ATGAAGGAAAAGGTGGATTCCCCAGTGACAGTGCTTGAGGACTATTTCAGGAGCTCAGATTCAGAATCAAGTTCTTCCAAAGAGCCTTCAGCGGATTCTGAGTCTCGAGAGTTTTCCAAATCTGCTTCTAGGTGGCATGAGTCTCGAGAGTTTTCCAAATCTGCTTCTAGGTGGCATGCATTTCTTCAATTATTGAGGAGCGGATCGAAGAAACAGATGAACACCTTACATCCTCTCAGTGTCCTCAAGCTCTCAAAAAGAATGAGCACTAGCATGAGGGAGTCCATTCTCCCAAGTTGTCTCTTAGATGCTACTGCTTCCCCCTGCAGGTCACCTTGGAAGATATTTACTCATCATGAGATTCAAGTTGCAACCAATTCTTTTAGCCAAGAAAATTTGATTGGGAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTTGTGGCAGTTAAACGGTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAACTTGGCGTAATGGCGCATGTAAACCATCCCAATACTGCTAAGTTGGTTGGTTATGGAGTGGATGGTGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGAAGCCTTGCTTCAGTTCTTTACGGTTCCAAGGAGAAACCACCATGGTTTATTAGGCACAAAATTGCATTAGGAACAGCAAAGGGTATATTATATCTCCATGAGGGATGTCAAAGAAGAATTATCCACAGGGATATAAAAGCTGCCAATATCTTACTCACGGAGGACTTTGAGCCTCAGATATGTGATTTCGGGCTAGCAAAATGGCTACCAGAAAATTGGACTCACCACACCGTTTCAAAATTCGAAGGAACTTTCGGTTACCTAGCACCTGAATACTTGCTGCATGGCATAGTAGACGAGAAAACGGACGTATTTGCCTTTGGTGTATTGCTATTAGAATTAGTGAGTGGGCGAAGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATTATGGAGCTTGTTGATCCTTCACTAGCAGGTGACTTCGACTCTAGGCAAATGAATCTTATGCTCTTGGCTGCTTCTTTATGCATACAACAGTCCTCAATTCGTCGCCCCTCTACAAGACAGGTTGTACAGCTTCTGAATGGGAACCTTAGCTGCTTCAAGGGCATGAAGAAAACTCGAATGCCTTTTTTCCGAAGAGTGTTTAGGGAAGAACTCCTTGATTCTGATTAG 1272 0.4269 MKEKVDSPVTVLEDYFRSSDSESSSSKEPSADSESREFSKSASRWHESREFSKSASRWHAFLQLLRSGSKKQMNTLHPLSVLKLSKRMSTSMRESILPSCLLDATASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAVKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKPPWFIRHKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELVDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELLDSD* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1249 423 Gene3D Transferase(Phosphotransferase) domain 1 205 406 - -
Gso2g1249 423 ProSiteProfiles Protein kinase domain profile. 128 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1249 423 PANTHER OS08G0249100 PROTEIN 1 421 - -
Gso2g1249 423 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Gso2g1249 423 SUPERFAMILY Protein kinase-like (PK-like) 109 393 IPR011009 -
Gso2g1249 423 MobiDBLite consensus disorder prediction 27 41 - -
Gso2g1249 423 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 421 - -
Gso2g1249 423 MobiDBLite consensus disorder prediction 1 41 - -
Gso2g1249 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Gso2g1249 423 Pfam Protein kinase domain 129 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1249 423 SMART serkin_6 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1249 423 Gene3D Phosphorylase Kinase; domain 1 103 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1249 Gso-Chr2 15528942 15532897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1249 115 389 Trihelix Transcription Factor Family AT1G68690 41.958 2.10e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso2g1249 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1249 - - gmx:100802873 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1249 2 15528942 15532897 Gso2g1249 2 15528942 15532897 ECH
Gso2g1249 2 15528942 15532897 Gso10g0204 10 2113654 2117408 GST
Gso19g1263 19 41184827 41188306 Gso2g1249 2 15528942 15532897 PCT
Gso3g1262 3 38309949 38313218 Gso2g1249 2 15528942 15532897 PCT
Gso2g1249 2 15528942 15532897 Gso19g1263 19 41184827 41188306 PCT
Gso2g1249 2 15528942 15532897 Gso3g1262 3 38309949 38313218 PCT