Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1248 ATGATTTCCCTCTTCCACCTCTTTCTCTTCCTATCTCTCCCTCTCTCTTGTCTATGTGACACGTGTCCCCTGAACTTCACCATCCTGGGCAGCACGAAACCCAGCTCCTTCGACACCTCGCGGTGCCAGGTGATCAGCCAATCCCTCCGCCTCGTCCTATCCGACTACCTCCGCCGCAGCGGCTTCTTCCTCCCTCCCCTCAACGCCTCCGACACATGCTGGACCCACTTCCAGTCCTACGTTAACAACTTCGACCCAACCTACAATATCACCTCCTCCTGCGGTTTCCAAACCTCGTGGATCTCCCAAGGCTGCAACAACGTCACCACCAAACAAGACTTCGAGTCCCTGGTCCCTCAACCATCCCTCCAGAACATCCGTAACAACTGCAACCAATCGCTCGAGAACAACTCCCCCTGCGCCCTCTGCACCTCTTCGTTTTCCCCTCTCCCGCCACTGGGAGACTCCGTCGGAAACCTCACCCACTGCACCGACTACGCTTTTATCTACGCCGCCGCTTTCGCCAACCGCTTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCTTGTTCTCCCTTCAGTTCTCCTCTAACAACAACAATTCCTCCTCCAAGAGAAAAAAGGTTATTATTGCTGTTGTTTCTGTTGTCTGTGTCTTGGTCGTGTTACTGCTGGCTCTCTGGGTTTGGGTTTATTGCAAGCTGGAAGACAAGGTTTTGGCCGGGGATAAGGATGTTCGTGTCTCGGAAATCAGTTTGGTTTCTGGATTGGATTCCATGGAGCAGAGCACAACCTTGATCAGGTTCACTTTTGATGATATTAAGAAAGCAACCAAGAATTTCTCGAGGGATAACATAGTTGGGAGAGGTGGCTACGGGAATGTGTACAAAGGCTTGCTTCCTGATGGGAGCGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCTGCTTCCGGTGATGCAAGCTTCACTCACGAAGTTGAGGTTATTGCAAGTGTCAGACATGTCAACCTTGTTGCTTTGAGAGGCTATTGTTCTGTTACTACTCGTTTGGAAGGTTACCAGAGGATCATTGTTTGTGATATGGTGAAAAACGGGAGCCTCCACGACCATTTGTTTGGTTCTAATGGTATGAAATTGAGTTGGCCAATTCGTCAGAAGATTGCTCTAGGCACTGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCAATCATTCATAGAGATATTAAAGCAAGTAATATACTTCTTGATGATAAGTTTGAAGCTAAAGTTGCAGATTTTGGACTAGCCAAGTTCAACCCTGAGGGGATGACACATATGAGCACTAGGGTTGCTGGAACAATGGGGTATGTTGCTCCTGAATATGCTTTGTATGGGCAATTGACAGAGAGAAGCGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAGATGAACAATGATGGTCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGTAAAGCTTTGAGTGTTATTGAAGATGGCATGCCACAACCGGGTTCAGAACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCAGTGCCTTCAATACCTGAAAGGCCAATTCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGTAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAATCATATACTATAGAAAGTGATCGTCAATCTTCTAATTCTAGGGATGAAAGAAGCTCAAGCTCTAGCTCTAGGATTTTGAGTACAGATTGA 1878 0.4771 MISLFHLFLFLSLPLSCLCDTCPLNFTILGSTKPSSFDTSRCQVISQSLRLVLSDYLRRSGFFLPPLNASDTCWTHFQSYVNNFDPTYNITSSCGFQTSWISQGCNNVTTKQDFESLVPQPSLQNIRNNCNQSLENNSPCALCTSSFSPLPPLGDSVGNLTHCTDYAFIYAAAFANRFGPSDPGTAKCLFSLQFSSNNNNSSSKRKKVIIAVVSVVCVLVVLLLALWVWVYCKLEDKVLAGDKDVRVSEISLVSGLDSMEQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSASGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGMKLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALSVIEDGMPQPGSEQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRLDIERSVSSSGSGQLSSPTGYQSYTIESDRQSSNSRDERSSSSSSRILSTD* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1248 625 Pfam SPARK 21 148 IPR043891 -
Gso2g1248 625 MobiDBLite consensus disorder prediction 579 604 - -
Gso2g1248 625 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 10 609 - -
Gso2g1248 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gso2g1248 625 PANTHER OS01G0253100 PROTEIN 10 609 IPR045271 GO:0004714|GO:0006468
Gso2g1248 625 Gene3D Transferase(Phosphotransferase) domain 1 361 562 - -
Gso2g1248 625 CDD STKc_IRAK 286 555 - -
Gso2g1248 625 Pfam Protein kinase domain 281 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1248 625 ProSiteProfiles Protein kinase domain profile. 280 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1248 625 MobiDBLite consensus disorder prediction 611 625 - -
Gso2g1248 625 SMART serkin_6 280 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1248 625 Gene3D Phosphorylase Kinase; domain 1 245 359 - -
Gso2g1248 625 SUPERFAMILY Protein kinase-like (PK-like) 263 567 IPR011009 -
Gso2g1248 625 MobiDBLite consensus disorder prediction 579 625 - -
Gso2g1248 625 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1248 Gso-Chr2 15516701 15519112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1248 21 609 Receptor kinase-like Gene Family AT2G48010 62.626 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso2g1248 Pkinase 4.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1248 - - gmx:100794233 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1248 2 15516701 15519112 Gso2g1248 2 15516701 15519112 ECH
Gso2g1248 2 15516701 15519112 Gso10g0205 10 2124189 2126974 GST
Gso19g1265 19 41197409 41199588 Gso2g1248 2 15516701 15519112 PCT
Gso3g1263 3 38318133 38323781 Gso2g1248 2 15516701 15519112 PCT
Gso2g1248 2 15516701 15519112 Gso19g1265 19 41197409 41199588 PCT
Gso2g1248 2 15516701 15519112 Gso3g1263 3 38318133 38323781 PCT