Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1233 ATGACCATCTCACTGTTTATGTGCAGAGTAACACAACCCATAATAAATGTTCCTTGCAGTGGGAAAAAACTGATCGTGAGGCAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACCGGAGCAGGGAAGTCAAGGCTTTCAATTGACCTAGCAACATGTTTTCCATCAGAAATCATAAACGCCGACAAAATCCAAGTCTTCGAAGGTCTAGACATAGTCACAAACAAAATCTCCAAGGAAGAGCAACGCGGGGTTCCGCACCACTTACTAGGAACAATAAAGCCCAACATGGATTTCAGCGTCAACGATTTCTGTGACACGTCATCAGAGGCCATTGACTCAATCACGAGGTGCCAGAAGCTTCCAATCGTCGTTGGAGGCTCAAACTCGTATCTGGAGGCCCTCATGGACGACGACGATTACAAGTTCCGATCGCGCTACGATATTCTCTGCCTCTGGGTTGACGTGGAAATGTCCGTGCTTAAGTCCTACGTGGCAGACCGTGTCGACCACATGTTTTATAAAGGAATGGTCGATGAGCTGAGACCGTTTTATAGTCCCAACGGGGATTACTCGCGAGGGGTGAAAAGGGCAATTGGGGTGCCCGAGTTCCACGAGTATTTTGGGAGGGAAGAGGTTGCTGACGAGGAGACAAAACAGAGGTTGTTGGAACAAGCGGTTAAGGAAATCAAACTGAACACGTGCAAGCTAGCGATGAAGCAGTTGGGGAAGATTCGTAGGCTCAGGAACGTTAAGAGATGGCATATTCATCGATTGGATGCTACGCCCGTCTTCCGAATGCGTGGGGAAGAAGCCAACGATGCTTGGAAGAGGCTGGTGGCAAAGCCTAGTGCTTTGATCGTTGCTCGCTTTCTCTATAATAACAACTCCAAAAATAATGCCAACGTTGTTTCTGGTTCTGGACTTAGAGTGCAACCAGCTGCTTCAGAGAGTGTTCTCGCTGCCGCAACTTGCTAG 984 0.4797 MTISLFMCRVTQPIINVPCSGKKLIVRQIEKEKVVVVMGATGAGKSRLSIDLATCFPSEIINADKIQVFEGLDIVTNKISKEEQRGVPHHLLGTIKPNMDFSVNDFCDTSSEAIDSITRCQKLPIVVGGSNSYLEALMDDDDYKFRSRYDILCLWVDVEMSVLKSYVADRVDHMFYKGMVDELRPFYSPNGDYSRGVKRAIGVPEFHEYFGREEVADEETKQRLLEQAVKEIKLNTCKLAMKQLGKIRRLRNVKRWHIHRLDATPVFRMRGEEANDAWKRLVAKPSALIVARFLYNNNSKNNANVVSGSGLRVQPAASESVLAAATC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1233 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 24 304 - -
Gso2g1233 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 187 IPR027417 -
Gso2g1233 327 Pfam IPP transferase 67 140 - -
Gso2g1233 327 Pfam IPP transferase 146 248 - -
Gso2g1233 327 Gene3D - 31 294 IPR027417 -
Gso2g1233 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 24 304 IPR039657 -
Gso2g1233 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1233 Gso-Chr2 15328894 15330330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1233 147 294 C2H2 Transcription Factor Family AT2G27760 32.571 4.13e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1233 K10760 - gmx:100799145 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1233 2 15328894 15330330 Gso2g1233 2 15328894 15330330 ECH
Gso2g1233 2 15328894 15330330 Gso10g0219 10 2276337 2277717 GST
Gso19g1282 19 41394186 41395517 Gso2g1233 2 15328894 15330330 PCT
Gso3g1281 3 38554699 38555941 Gso2g1233 2 15328894 15330330 PCT
Gso2g1233 2 15328894 15330330 Gso19g1282 19 41394186 41395517 PCT
Gso2g1233 2 15328894 15330330 Gso3g1281 3 38554699 38555941 PCT