Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1232 ATGGAAGATCAAAGTAACCAAGAGAACCCAGGAAGACCCACCAGTGGTGTCTCTCATCATCAATTTCCAATCCCAAAAGTTGCCATTGCAGCATCTTCTGGAAGAAATGGAAGCCACAGGACTTGCCTCCCAAAACTAACTCACCATAACTATGTTGAGTATCTTTCAGAATCCTCAACTTATAATCTTCCAAAGACTTCCACCGAATTCATGATGAAGAGCAGTTATCTACCTGTTGGCAACATCAGTGATGGTTATGGGGTCAGTGGAACAGACAGAAACTTCTTTTACAGTGATGATCCAGGAAAAGCTTGTTCCTTTAAGACTATTGGTTCTTCAAGTAATGACCTTGACATTAGTAAGCAGGTGGGGTTTTGGAGAGCTGATGAAGGAATCAAAGTTGAAACTGAAAGTAGTCAGAATCTTGTTTATGCTGAGAGTCATGCATCATGGACATCAGATTCTGTTGGAGATAAGCATAATGCTTCACATGATCCAATGTTCATGGTTGGTGCACCTACTTTACTTCCCAAACCAGGATGCAGCTCCTCAAAACAGAAAGCTCGTGTCACTGAACGTCAACGCAGGCAACGCATCGCTGATAACCTCAAAGCCTTGCATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCTTACGTATTGGACGACATAATTGATTATGTCAAATATTTGCAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTATTGCAAGCGGACTCAACTGCTATACCACTAGTTTTTCATGAGGGTTACGGCCATTATATCAACCAAAAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTAGTTGAAGATGATTCAGCAGCAGCTGTTCAGCTACTAGAGAGTAAGGGTCTTTTCCTGCTGCCTATGGCATTGGTTGATGAGTTGAGTGAGGCTGTGCAAATGTTTGGTGGGAGTGCACTTGTCTGA 966 0.4244 MEDQSNQENPGRPTSGVSHHQFPIPKVAIAASSGRNGSHRTCLPKLTHHNYVEYLSESSTYNLPKTSTEFMMKSSYLPVGNISDGYGVSGTDRNFFYSDDPGKACSFKTIGSSSNDLDISKQVGFWRADEGIKVETESSQNLVYAESHASWTSDSVGDKHNASHDPMFMVGAPTLLPKPGCSSSKQKARVTERQRRQRIADNLKALHELLPNPAEGSQAYVLDDIIDYVKYLQLQIKEQSGSRLLQADSTAIPLVFHEGYGHYINQKMLNEPLEEIMGKLVEDDSAAAVQLLESKGLFLLPMALVDELSEAVQMFGGSALV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1232 321 Gene3D - 181 242 IPR036638 GO:0046983
Gso2g1232 321 MobiDBLite consensus disorder prediction 1 16 - -
Gso2g1232 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Gso2g1232 321 MobiDBLite consensus disorder prediction 1 22 - -
Gso2g1232 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 242 IPR036638 GO:0046983
Gso2g1232 321 SMART finulus 189 238 IPR011598 GO:0046983
Gso2g1232 321 CDD bHLH_AtbHLH_like 191 238 IPR045239 -
Gso2g1232 321 Pfam Helix-loop-helix DNA-binding domain 185 233 IPR011598 GO:0046983
Gso2g1232 321 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 27 305 - -
Gso2g1232 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1232 Gso-Chr2 15319952 15322425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1232 190 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 42.400 2.08e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1232 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1232 - - gmx:100788949 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1232 2 15319952 15322425 Gso2g1232 2 15319952 15322425 ECH