Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1225 ATGACTGCGCCACTAGACACTGGCCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAGCAAGTGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAGACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCTTCTCTCCAAAGAAGTCAGCAACTTAGAGAACTTTATGAATCATTGTCAGTCGGAGAGACAAATCCGCCGACTCGCCGGCCTTGTGCTGCCTTGTCGCCGGAGGACTTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCCAGGAGGCAGCATCTATGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGTATACAGACCGTGGTGTGCATTCCTTTATTGGATGGCGTCGTTGAATTTGGGACAACAGATAAGGTTCAAGAAGATCTTAGCTTCATCCAACACGTGAAGACTTTTTTCATAGACCATCTCATCCCTCTCAGGCCAAAGCCTGCCCTATCGGAGCACTCAACCTCCAACCCTACCTCCTCCGACCACATCCCCACAGTCATGTACACCATGGTGGACCCACCTGCCGCCAAGTGCAACCTAAATGATGACATGGATGAGGATATTGAAGAGGAAGAGGAGGAGGAAGAAGAGGACGAGGTGGAATCCGGTTCCGAAGATGAAACTGGAGACGGTATTGCCTGCCAAACTTTGAGACCATCAACGGTGGCAGAGCCCAGCGAGCTGATGCAGCTGGAGATGCCAGAGGACATTCGACTCGGGTCGCCGAACGATGGATCAAACAACCTGGACTCAGACTTTCATTTGCTTGCGGTGAGCCAGGGTGGCAATGAGGCAAGGCAGGCTGAGTCAACTCGAAGGTGGAGCTCAAGTCAAGAACCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTAGAAGACTTGACCCAAGAGGACACTCACTACTCTCAAACGGTGTCCAACATCCTCCAAAACCAGACCACACGGTGGCTCGCCTCACCCTCCTCCATTGGCTACAACACATACTCCACGCATTCGGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACTTCCACCCGGCGGCGGACGGCACCAGCCAGTGGCTCCTCAAGTACATCCTCTTCACGGTCCCGCACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCATACCGCGGCGGACACCAAGCTCCGCGGCAAGGGGACGCCGCAGGACGAGCTCAGTGCGAACCACGTGCTGGCCGAGCGCCGCCGCCGCGAGAAGCTGAATGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCTTAACGGAGGAGCGTTCCAAGCTCCCAGAGGTAGCAGTTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGATGATGGAAAAGAGGAAGGTGAGGATCGTGGAAGGGGTAGCGGCGAAGGCAAAGGCAGTGGAAGTTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAGAGCGACGCGCTGTTGGAGATTGAGTGTCGTCACAGAGAAGGGTTACTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATAGGGGTGCAGTCTTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAGCATGCAAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCCGTTGACTAA 1962 0.5398 MTAPLDTGLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSVGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLSFIQHVKTFFIDHLIPLRPKPALSEHSTSNPTSSDHIPTVMYTMVDPPAAKCNLNDDMDEDIEEEEEEEEEDEVESGSEDETGDGIACQTLRPSTVAEPSELMQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGGNEARQAESTRRWSSSQEPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQTTRWLASPSSIGYNTYSTHSAFAKWSSRASHHFHPAADGTSQWLLKYILFTVPHLHAKNPGESSPHTAADTKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRLTEERSKLPEVAVQRTSSSSSKEQQRSGVTMMEKRKVRIVEGVAAKAKAVEVEATTSVQVSIIESDALLEIECRHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1225 653 MobiDBLite consensus disorder prediction 316 336 - -
Gso2g1225 653 MobiDBLite consensus disorder prediction 520 542 - -
Gso2g1225 653 Gene3D - 452 522 IPR036638 GO:0046983
Gso2g1225 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 453 517 IPR036638 GO:0046983
Gso2g1225 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 451 500 IPR011598 GO:0046983
Gso2g1225 653 MobiDBLite consensus disorder prediction 241 261 - -
Gso2g1225 653 MobiDBLite consensus disorder prediction 427 454 - -
Gso2g1225 653 Coils Coil 236 256 - -
Gso2g1225 653 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Gso2g1225 653 MobiDBLite consensus disorder prediction 318 336 - -
Gso2g1225 653 PANTHER TRANSCRIPTION FACTOR TT8 8 650 - -
Gso2g1225 653 Coils Coil 490 517 - -
Gso2g1225 653 MobiDBLite consensus disorder prediction 241 280 - -
Gso2g1225 653 PANTHER TRANSCRIPTION FACTOR TT8 8 650 - -
Gso2g1225 653 MobiDBLite consensus disorder prediction 523 539 - -
Gso2g1225 653 Pfam Helix-loop-helix DNA-binding domain 454 501 IPR011598 GO:0046983
Gso2g1225 653 SMART finulus 457 506 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1225 Gso-Chr2 15261321 15270917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1225 293 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.845 5.91e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1225 bHLH-MYC_N 9.3e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1225 - - gmx:100786815 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1225 2 15261321 15270917 Gso2g1225 2 15261321 15270917 ECH
Gso19g1627 19 45205637 45206367 Gso2g1225 2 15261321 15270917 PCT
Gso3g1652 3 42459859 42462283 Gso2g1225 2 15261321 15270917 PCT