Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1213 ATGAGAGAGGGGCTGAGATCGCGGACCCGATTGGGGACGGCTTCTGGTGGTGAAGGAGTTGATCACAAGAAAACGGTTGCTGTGAAGAGTGAGGCTGTTGATTTGGGTGATGAGGGTTTGGAGGTACAGAAGTCAACGATTGAGAAGAAGGGTGAAGTTGAATGCGGTGTGAAACAAGAATGTGGCTTTGATTTGAATGTGAGTCCGAGTGCAGATGTTGACTTAGCTGAGGATGGGAGCGGTAAGAGTTGTTTAAATGGTGGGGGTAGCATTCTAGTAGCTGAGGAAGATAGGAAGGCAAAGAAGAAACACGACTCAAACGATGGAGTATTGGTTGGTGGTCGAGTGTTGCGCCCTAGGTCAAAGAGTGGGGATTGTAAAAGACTGTATTATGGAGAGAATGATGATGTTGTTTCTGGGGATAATGGAGAGCATAGTGGGTGTGAGAGGGTGAAAGTTAAGAAGGAACATGAAGAAGCTGATGATTTTTTGGCCGACAGCTGTGAAAAGGAAATAATTAAGCCAAAGAAGGAAGGGGATGGCAGGAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAGATAGATTTGAAAGGGGAAGATGAACCAGGTGATCAGTTGCCACGTAAGCGTGGAAGACCCCCCCTGGCTGGCCGACAAAACCATCTCGTGACTGTGGTGACACATAATAGAAAAGGAAAGGCGACCCTTCGAAAAGGTAAAAAAGGTTTAACTAAGAGCGATGGTGCTAAGGTGAATGCAATTGGCGATACAAATTCAAGGAATTCTACTGGGGGTGAGTTAGAAAAGAAGGAGGATTCTCTTGTCAAGAGGAATGCAGTAAAGCAATTAGTGAGGGATCAAATAAAGGAACAGCTCTCAGCTGCAGGGTGGACAGTTGACTTTAGGCCCAGGAATGGCAGAGAGTACCATGATGCAGTGTATGTTAGTCTGGACGGACATACACACTGGTCAATCACCTTGGCCTACAAAAGGCTAAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATAAGCCAGGCTTCAAATTTACACCAATAGCAGAAGAGGATTTCAAAATGCTAACTAAGGTAATGAACAAGCAAAGAAAAAAAGGGGGAAAGGGTGGAAAGAAAGTTGATGGAGTCAATGGTAAAAAGAACAAAGAAAAGTCAGGTTATGGTGCAGGCATGGGTAAGTCAATGAAGAGGAAAATGAAAAGGAAAACATCACCTAACAGGATGCCAGTTGTGAGGGATCATAAGCGACAGAAAACACAAAACAAGAAGCGATGTGCTCCGTTGGCACGCAATGCCGAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACTGCGGAAAACGAACTTTGCTTGCCTGGATGATTGATTCGGGCACAGTCCTTCAAAATGGGAAGGTTCATTATATGCCACACAAAAGCAAAAGTGCGGTACTGGATGGTGAGATTACAGGAAATGGCATTCATTGTGGGTGCTGCGATAAAATCTTTACAATTTCAGACTTTGAACTTCATGCAGGAAGCAAACTTGCTGATCCACTTAAAAATATATATGTTGGGGAAGGAACTTCCCTTTTACAATGCTTGCTAGATTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCATCAACATTCCATCAAGGATGCTTGGATATAAAAAAGTTTCCATCTGGCGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGATCAGTTAGTGGAAGTTCAAACCAAAGGGATGACAATGATGAACTTATTGTCTCAAAATTACTCACATGCCAATTATGTGAGGAAAAATATCACAGATCCTGTATTGAGGCAAATGATGCCAATACTGATGATTCCAGGGATGTCTTCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGTGTTAAACATGAAATGGAAGATGGATATTCTTGGACTTTTATACGACGGTCGGATGTCGGCTTTGATGCTTCTCAGATAAAACCTCAGATGGTTGAATGTAATTCTAAGTTGGCTGTTGCAGTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGATCAATCTGATCCACAGTATTCTGTATAATCGTGGGTCAAATTTCAATCGTCTGAATTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATAATCTCTGCTGCATCTATCAGGATCCGTGGGAACCAGCTAGCAGAGATGCCATTTATTGGTACCCGATATATGTACAGGCGACAAGGAATGTGCCGCCGGCTTCTAAATGCTGTTGAATGGGGACTCGGCTCTTTAAATGTTGAGTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGTCACTTGAATCTACAAGCAAGCAAATATTACATAATAAGAATCTGTTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATAAATTGGCTGGTCAAAATCTGAATCCTTCGGAAGGCCAGATAAATGATGAAACCATATCTATTGAATCTGGTTGTCATCTTCCTGATGGTTCATTGAACAAGGTACCTGACATTGCTAGCAATGCTAAAGATCATAGGAAATCTTCAACAGATGACACATGTCAAGTTGTATGTCAGGCAGCTCCCGAAATTTTGGTGATGGAAGACAACAATAGTATTGAAAATGCCCGTGATTATGTGACTGGTACTTGTTGCCGAGCTGGAGATAGCCAGTTGAACAGTTGCTGGGTTCCTTGTGAGGAGAGACAGTGCCTCACGTCTTGTATTAGATCTGAGGCCACCGAAGGAAATTGTGTTAGTGTTTCGTTGGAGGTTACTGAAAACTTTCTCAATCAGGTCAAAGTAGCAAATGAAGCTATTTCAAATAGCAGTGCTGAAAATTCTGCATCCTGTGGTGCAGAAAGAATTCCTCTTGACTCACAAATTGCATTTGATACAAGGGATTCAAAAGATTCTGGTGACTCTATTCACCAGGATTCATATAAGATTTCTGACAGTTGTGAACTGAGAAGCAAGACTGATTGTGGTGAACCGAACTTTATAGGAACAAAAGAAGTACATGCTGAACCTGTTCGTGTTTCTGGTTTTCATTCTAGACCCAAGGGTGATTGTGCTTCTTGTGAAGCTGCTTCTGCAACCAACGTCTTAATACACCTTAGATCACAGAAGATCACCGATAATAAGCCTTGGATGAACGGCACATCAGAGCTAGCTGATCCTGATTTACAGGTTGATCAAACTGCACGGAACAGTGCTCCCTCCTTGTGGAGCCCAAACACTGCTTCTGGTGCAGCTCTTCACTGGGCATCTGCTGGCAGTGCTTCACGTGGTAGTACTGAGGGGATAGTTTTGTCAAACCAAGCAAGTTGA 3543 0.4251 MREGLRSRTRLGTASGGEGVDHKKTVAVKSEAVDLGDEGLEVQKSTIEKKGEVECGVKQECGFDLNVSPSADVDLAEDGSGKSCLNGGGSILVAEEDRKAKKKHDSNDGVLVGGRVLRPRSKSGDCKRLYYGENDDVVSGDNGEHSGCERVKVKKEHEEADDFLADSCEKEIIKPKKEGDGRRKLKRKRGRPPKIDLKGEDEPGDQLPRKRGRPPLAGRQNHLVTVVTHNRKGKATLRKGKKGLTKSDGAKVNAIGDTNSRNSTGGELEKKEDSLVKRNAVKQLVRDQIKEQLSAAGWTVDFRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYKPGFKFTPIAEEDFKMLTKVMNKQRKKGGKGGKKVDGVNGKKNKEKSGYGAGMGKSMKRKMKRKTSPNRMPVVRDHKRQKTQNKKRCAPLARNAEEIDSETEGYVLYCGKRTLLAWMIDSGTVLQNGKVHYMPHKSKSAVLDGEITGNGIHCGCCDKIFTISDFELHAGSKLADPLKNIYVGEGTSLLQCLLDSWNKQDESERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQGCLDIKKFPSGDWHCIYCCCKFCGSVSGSSNQRDDNDELIVSKLLTCQLCEEKYHRSCIEANDANTDDSRDVFFCGNRCQELSERLEMLLGVKHEMEDGYSWTFIRRSDVGFDASQIKPQMVECNSKLAVAVSIMDECFMPYIDHRSGINLIHSILYNRGSNFNRLNYSGFVTAILERGDEIISAASIRIRGNQLAEMPFIGTRYMYRRQGMCRRLLNAVEWGLGSLNVELLVIPAISELRETWTSVFGFESLESTSKQILHNKNLLVFPHVDMLQKKISKHKLAGQNLNPSEGQINDETISIESGCHLPDGSLNKVPDIASNAKDHRKSSTDDTCQVVCQAAPEILVMEDNNSIENARDYVTGTCCRAGDSQLNSCWVPCEERQCLTSCIRSEATEGNCVSVSLEVTENFLNQVKVANEAISNSSAENSASCGAERIPLDSQIAFDTRDSKDSGDSIHQDSYKISDSCELRSKTDCGEPNFIGTKEVHAEPVRVSGFHSRPKGDCASCEAASATNVLIHLRSQKITDNKPWMNGTSELADPDLQVDQTARNSAPSLWSPNTASGAALHWASAGSASRGSTEGIVLSNQAS* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1213 1180 MobiDBLite consensus disorder prediction 193 209 - -
Gso2g1213 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 630 IPR013083 -
Gso2g1213 1180 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Gso2g1213 1180 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Gso2g1213 1180 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 708 868 IPR000182 GO:0016407
Gso2g1213 1180 SUPERFAMILY FYVE/PHD zinc finger 560 612 IPR011011 -
Gso2g1213 1180 MobiDBLite consensus disorder prediction 1 23 - -
Gso2g1213 1180 MobiDBLite consensus disorder prediction 1160 1180 - -
Gso2g1213 1180 MobiDBLite consensus disorder prediction 174 219 - -
Gso2g1213 1180 Pfam Tify domain binding domain 490 539 IPR032308 -
Gso2g1213 1180 SMART PHD_3 567 608 IPR001965 -
Gso2g1213 1180 SMART PHD_3 609 669 IPR001965 -
Gso2g1213 1180 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 257 1130 - -
Gso2g1213 1180 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 27 264 - -
Gso2g1213 1180 MobiDBLite consensus disorder prediction 369 435 - -
Gso2g1213 1180 MobiDBLite consensus disorder prediction 97 117 - -
Gso2g1213 1180 PANTHER PHD FINGER PROTEIN 12 27 264 IPR042163 GO:0003714|GO:0045892
Gso2g1213 1180 PANTHER PHD FINGER PROTEIN 12 257 1130 IPR042163 GO:0003714|GO:0045892
Gso2g1213 1180 MobiDBLite consensus disorder prediction 231 271 - -
Gso2g1213 1180 ProSiteProfiles Zinc finger PHD-type profile. 565 610 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1213 Gso-Chr2 15126239 15134564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1213 182 920 PHD Transcription Factor Family AT5G36670 41.612 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1213 - - gmx:100784172 2321.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1213 2 15126239 15134564 Gso2g1213 2 15126239 15134564 ECH
Gso3g1308 3 38928445 38931440 Gso2g1213 2 15126239 15134564 PCT
Gso2g1213 2 15126239 15134564 Gso3g1308 3 38928445 38931440 PCT