Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1194 ATGTTCCCTGCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTCAATCACGTTATCACAACAACCATTTCTCCAGAACAACCTCTAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCAGATGCTGAAGTGATAGCTTTATCACCGAAGACTCTTCTGGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGACATAACCTCCCGTGGAAGCTGAAGCAAAGGAGCAACAAAGAGGTGAAAAAAAAGGCCTACGTTTGCCCTGAGCCTTCATGCGTTCACCACAACCCTTCAAGGGCTTTGGGGGACCTCACTGGAATTAAGAAACACTACTGCAGAAAACATGGGGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGGCTGTGGAACCCTTTTTTCCAGGAAGGACAACTTCATAACTCACAGAGCATTCTGCGATGCATTGGCTGAAGAAAGTGCAAGACTCTCAGCAAACCAACTAGCCACCAACACCACAAATCCATTAGTTCAATCCCTCTTCCTTTTCCCAACCCAACAACACAACAACAATTTCATCAATCCATGGGACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAGCAACCTTACCACTCTCCACAACAACATCAAACCTGAATCTCACAACTTCCACATCCCCAACACCACCACCACCTCCACTGCCAACAACAACATTTCTTCTTCATTCCTTCATCATCATCAACACCCCAATAAGAGCATGATAACCTCACCCTTCCGTGACCTCCACGAGCGCACGCAACCCCCCTCCAACGCTGCCACGTCAGCACACCTCTCAGCCACTGCGTTGCTCCAGAAGGCCGCGACCGTGGGTGCCGCCGCCATCACGGGACCCACTCACGTGACTCAGCTCAGCATGGCCGAGCTAGGAACCGAGACGACTCATCTGGACTCAGTGCCATTGCCGCCCGATCAACGCTACATGAGCATGAGAGGCATCAATAGTAACAATGACGGCCTCACGAGGGACTTTCTCGGCCTCACCAACGGCGGCGCGGTTGACGTTAGCATCGACGTCAAGGATATGCTGACGTTCACCGCGGGGAGCGTAGAGTACAACCATCACCACCACCAACAACAACCCTACCAGCACCACCATAATAACTCGCTTTTCAAGCCACAACAAGGTTTTGGATTCCTTGGGACAACCACTGGCCCCGAATACTGGGGAAATTGTGAGTAA 1377 0.4953 MFPAVMSNSNSLSEEATVSCGTRIAGLNHVITTTISPEQPLKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCGCGTLFSRKDNFITHRAFCDALAEESARLSANQLATNTTNPLVQSLFLFPTQQHNNNFINPWDPNPNPNPNPNPSNLTTLHNNIKPESHNFHIPNTTTTSTANNNISSSFLHHHQHPNKSMITSPFRDLHERTQPPSNAATSAHLSATALLQKAATVGAAAITGPTHVTQLSMAELGTETTHLDSVPLPPDQRYMSMRGINSNNDGLTRDFLGLTNGGAVDVSIDVKDMLTFTAGSVEYNHHHHQQQPYQHHHNNSLFKPQQGFGFLGTTTGPEYWGNCE* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1194 458 MobiDBLite consensus disorder prediction 235 256 - -
Gso2g1194 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 428 - -
Gso2g1194 458 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Gso2g1194 458 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Gso2g1194 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Gso2g1194 458 MobiDBLite consensus disorder prediction 275 300 - -
Gso2g1194 458 Gene3D Classic Zinc Finger 69 96 - -
Gso2g1194 458 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Gso2g1194 458 Gene3D Classic Zinc Finger 107 197 - -
Gso2g1194 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 428 - -
Gso2g1194 458 SMART c2h2final6 149 169 IPR013087 -
Gso2g1194 458 SMART c2h2final6 73 95 IPR013087 -
Gso2g1194 458 SMART c2h2final6 114 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1194 Gso-Chr2 14903903 14908172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1194 17 429 IDZ Gene Family AT4G02670 48.848 4.46e-119 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g1194 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1194 K25870 - gmx:100780056 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1194 2 14903903 14908172 Gso10g0258 10 2681722 2686333 GST
Gso2g1194 2 14903903 14908172 Gso19g1325 19 41960413 41964780 PCT
Gso2g1194 2 14903903 14908172 Gso3g1325 3 39138617 39143265 PCT