Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1183 ATGGCGAATCACCCCTCCCAAGCCTCCACCGACGACTTCCTTGACCAAATCCTCGGCCTCTCGACCTTCGCCTCCGCCGACGCCTCTCCGATGATGCTTCAGCTCAACTCCGGCGACGCCGCCACCCACCTAGCCTCCTTCCACGCGCCGCCCTACCAGCTCGGCCTCAGCCTGGACCAAGGTAAGGGACCCTTCCTCACGCCTGAGGACGCTTCTGGAAGCGGCAAGCGCTTCCGCGACGACGCCGTTGATACCAGACCTAACAACGTTTTTGATGGGCAACCCATGCCTACAACTGTTCCTACTGCTCCACATCTACCAGCAGTGCGACCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACATAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTGGTCCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGAATTGGTGGAGCTGATGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCTTGGGAGAAGTGCTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTTGGTGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCCGTCTCACTAGCATCAGCAATATACCAGTCACAACCATCAGACACTTCTAGTATAGTTAAGCCTGAAATTAATCCTCCTTCATAG 825 0.5248 MANHPSQASTDDFLDQILGLSTFASADASPMMLQLNSGDAATHLASFHAPPYQLGLSLDQGKGPFLTPEDASGSGKRFRDDAVDTRPNNVFDGQPMPTTVPTAPHLPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRIGGADAVAPLVTDIPLSSVEEEGGEGRNQPAWEKCSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPVSLASAIYQSQPSDTSSIVKPEINPPS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1183 274 SMART finulus 125 174 IPR011598 GO:0046983
Gso2g1183 274 MobiDBLite consensus disorder prediction 65 105 - -
Gso2g1183 274 Pfam Helix-loop-helix DNA-binding domain 124 168 IPR011598 GO:0046983
Gso2g1183 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 178 IPR036638 GO:0046983
Gso2g1183 274 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 263 - -
Gso2g1183 274 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 263 - -
Gso2g1183 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Gso2g1183 274 Gene3D - 114 176 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1183 Gso-Chr2 14736627 14740683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1183 47 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 3.75e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1183 HLH 9.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1183 - - gmx:100820324 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1183 2 14736627 14740683 Gso2g1183 2 14736627 14740683 ECH