Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1181 ATGGAGAATTCATTGGGAAAGTACGGAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGGTTGGGGTTGCCTGGAAGCGATGAGCCTGAGAAACGTTCTGCTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAAGGGCAACATGAATTCTTCTGATGGTTCTGATATCACAAGTGATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATAGTCTACAACAAAAGAAAGAAGAACAGGCTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGAAGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAACATGTTCAAGTGCACATTTGGTCAATATTCGGAAAGGGAAGGGTATAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 609 0.445 MENSLGKYGKELNLEATELRLGLPGSDEPEKRSAVRSNKRSSPEASEEECISKGNMNSSDGSDITSDDQDNVVPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLRKIDLKVYKSYPELLKALENMFKCTFGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGCF* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1181 202 Pfam AUX/IAA family 17 200 IPR033389 -
Gso2g1181 202 MobiDBLite consensus disorder prediction 18 71 - -
Gso2g1181 202 SUPERFAMILY CAD & PB1 domains 102 192 - -
Gso2g1181 202 MobiDBLite consensus disorder prediction 51 69 - -
Gso2g1181 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 200 IPR003311 GO:0005634|GO:0006355
Gso2g1181 202 MobiDBLite consensus disorder prediction 24 47 - -
Gso2g1181 202 ProSiteProfiles PB1 domain profile. 106 193 IPR000270 GO:0005515
Gso2g1181 202 Gene3D - 100 202 - -
Gso2g1181 202 PANTHER AUXIN-INDUCED PROTEIN 2 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1181 Gso-Chr2 14725381 14726978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1181 34 199 B3 DNA Binding Superfamily AT2G46530 31.250 1.46e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso2g1181 AUX_IAA 8.8e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1181 K14484 - gmx:100780752 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1181 2 14725381 14726978 Gso2g1181 2 14725381 14726978 ECH
Gso2g1181 2 14725381 14726978 Gso10g0271 10 2860778 2862540 GST
Gso19g1338 19 42088395 42089735 Gso2g1181 2 14725381 14726978 PCT
Gso3g1335 3 39247876 39249299 Gso2g1181 2 14725381 14726978 PCT
Gso2g1181 2 14725381 14726978 Gso19g1338 19 42088395 42089735 PCT
Gso2g1181 2 14725381 14726978 Gso3g1335 3 39247876 39249299 PCT