Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1180 ATGGTGTTTGAGGAAACTGAGCTGAGGCTGGGACTGGGACTATGTCTCCCTGGAAATGGAACCACGGCAACAACTGAAGCTGCTGCTGCGGAATTAGGAGTGAGGAAGAGAGGGTTCTCTGAGACTGAAACTGATGAAACAGCCACCGTTGATTTGATGCTTAACCTCTCACCCAAGGAAGCTGCTGCTGCTGATGGTGCAGATCCACGTGAGAAGCCAAAGACTTCGCCGAAGGAGAAGACCCTTCTGCTTCCCGATCCCGCCAAGCCTCCTGCCAAGGCGCAAGTGGTGGGATGGCCACCCGTGAGGTCTTTCCGGAAGAACATGTTCGCAGCCCAAAAGAGCAGCGGCGGAGAGGAAAGCGAAAAGAGCAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTTGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCGACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTGCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 741 0.5061 MVFEETELRLGLGLCLPGNGTTATTEAAAAELGVRKRGFSETETDETATVDLMLNLSPKEAAAADGADPREKPKTSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGEESEKSSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1180 246 Pfam AUX/IAA family 5 237 IPR033389 -
Gso2g1180 246 MobiDBLite consensus disorder prediction 64 79 - -
Gso2g1180 246 MobiDBLite consensus disorder prediction 61 95 - -
Gso2g1180 246 PANTHER AUXIN-INDUCED PROTEIN AUX28 1 239 - -
Gso2g1180 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 239 IPR003311 GO:0005634|GO:0006355
Gso2g1180 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Gso2g1180 246 Gene3D - 122 240 - -
Gso2g1180 246 SUPERFAMILY CAD & PB1 domains 124 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1180 Gso-Chr2 14701815 14705282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1180 120 236 B3 DNA Binding Superfamily AT4G23980 33.333 1.25e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso2g1180 AUX_IAA 2.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1180 K14484 - gmx:100780214 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1180 2 14701815 14705282 Gso19g2065 19 49214851 49217280 ECH
Gso2g1180 2 14701815 14705282 Gso2g1180 2 14701815 14705282 ECH