Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1171 ATGATGACGATGAAGAGGTTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAAAAAGTTCCTCAAAGAAGCCACTGCTATTTCCCTTTGCCTGCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTTGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAGATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCTTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTGTCGTCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTATCCATTGAGAAGTTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTTGTGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGCGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCGTCTGATGCTAAACTAGAATCTATGAAAATGACTGATAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTTGAAGAAGAAAAGATTAGCACTGATCATGCCTCTTCAGATACATCAAAACCCAACAAATTGCGAAGAGTTCGCCAAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACCGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCACAAATTCCTTCAAATTATGTAAGAATAAAGAACGGAAGCATACCTGTTTCCTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAATTTGGTTGACCTGTGGGGGGTTGATACAGCGTCTTTGGGACATAGAATTTCAGCAACCATTGGATCCTCAGGGAAAGATTTTGTCTTGATCCTAACCTATGGTCGGAAGGTCCTGCACCCTTGA 1296 0.409 MMTMKRLVRVKRDAIAACMTCPLCKKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSVLLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSLSIEKFIKKEEELLEDHQDNLCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPQEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKMTDSDAKVLKAKIKEKKRKAKVEEEKISTDHASSDTSKPNKLRRVRQKKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVDLWGVDTASLGHRISATIGSSGKDFVLILTYGRKVLHP* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1171 431 MobiDBLite consensus disorder prediction 168 201 - -
Gso2g1171 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 427 IPR044807 GO:0004842
Gso2g1171 431 MobiDBLite consensus disorder prediction 167 207 - -
Gso2g1171 431 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Gso2g1171 431 SUPERFAMILY RING/U-box 16 86 - -
Gso2g1171 431 Coils Coil 251 271 - -
Gso2g1171 431 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Gso2g1171 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 427 - -
Gso2g1171 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Gso2g1171 431 SMART ring_2 21 61 IPR001841 -
Gso2g1171 431 MobiDBLite consensus disorder prediction 126 145 - -
Gso2g1171 431 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Gso2g1171 431 MobiDBLite consensus disorder prediction 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1171 Gso-Chr2 14623345 14629194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1171 2 349 C3H Transcription Factor Family AT2G30580 49.714 1.58e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1171 K16277 - gmx:100777543 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1171 2 14623345 14629194 Gso2g1171 2 14623345 14629194 ECH
Gso2g1171 2 14623345 14629194 Gso10g0277 10 2916537 2922450 GST
Gso19g1345 19 42153291 42159277 Gso2g1171 2 14623345 14629194 PCT
Gso3g1343 3 39326046 39331508 Gso2g1171 2 14623345 14629194 PCT
Gso2g1171 2 14623345 14629194 Gso19g1345 19 42153291 42159277 PCT
Gso2g1171 2 14623345 14629194 Gso3g1343 3 39326046 39331508 PCT