Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1165 ATGGCCTCAGAAGAGCCCACTGTCGCGGTGGAACCCGCTCCCGAACCTGCCACCGCCGAGCCTCCCCCGGAGGAGAAGGAGGAGCCCAAACCTGAAGCCAAGGCTAAGAAAACCAAGGAACCCAAACCTAAAAAGGTTTCCAGACCACGCAACCCTCCCACTCATCCTTCCTACGAGGAGATGATTAAAGACGCAATTACCTCGCTGAAGGAGAAAACCGGTTCGAGCCAACACGCGATTGCGAAGTTCATCGAGGAGAAGCACAAGCAGCTTCCACCGAACTTCAGGAAGCTTCTTCTCTACCATTTGAAGAAACTTGTAGCCGCTGGAAAACTCGTCAAAGTCAAAGGCTCCTTCAAGCTCCCACCTACCCGACCTTCTGCATCTTCTTCTTCTTCGCCGGCGAAGAAGAAGAAGCCCGCACCTGCTAAGCCCCAACCCAAGCCCAAGCCTAAGCCTAAGCCCAAGCCCGCTGCTAAAGCCAAGGACACTAAGGCAACTAAGTCAAAGGCACCAGCTAAGCCCAAGGCAGCTGCTAAGCCTAAAGCCAAAGCTCCAGCCAAGCCCAAGCCCGCCCCTAAACCAAAGGCTGCTGCTGCTGCTGCTTCCAAGCCCAAGCCTGCTGCCGCCAAGCCCAAAGGGACTAAGCCAGCTGCCAAGCCCAAGCCCAAGCCCGCTGCTAAAACAAAGGCTGCTGCTGCCAAGCCCGCGGCAAAGCCCAAAGCGAAGCCCGCCAAGGCTTCAAGGACGTCGACACGGACTTCACCAGGGAAGAAAGCAGCTCCTGCTGCGAAGCCGGCAGCGAAGAAAGTAGCGCCTGCTAAGAAAGCGCCAGTGAAGAGTGTGAAACCAAAGAGTGTAAAGTCTCCAGCGAAAAAGGCTACGGCTAAGAGAGGGGGTAGGAAGTGA 909 0.5611 MASEEPTVAVEPAPEPATAEPPPEEKEEPKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQHAIAKFIEEKHKQLPPNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPSASSSSSPAKKKKPAPAKPQPKPKPKPKPKPAAKAKDTKATKSKAPAKPKAAAKPKAKAPAKPKPAPKPKAAAAAASKPKPAAAKPKGTKPAAKPKPKPAAKTKAAAAKPAAKPKAKPAKASRTSTRTSPGKKAAPAAKPAAKKVAPAKKAPVKSVKPKSVKSPAKKATAKRGGRK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1165 302 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g1165 302 MobiDBLite consensus disorder prediction 141 155 - -
Gso2g1165 302 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g1165 302 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g1165 302 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g1165 302 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g1165 302 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g1165 302 PANTHER HISTONE H1 173 299 - -
Gso2g1165 302 PANTHER HISTONE H1 2 201 - -
Gso2g1165 302 Gene3D - 50 130 IPR036388 -
Gso2g1165 302 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g1165 302 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g1165 302 MobiDBLite consensus disorder prediction 156 170 - -
Gso2g1165 302 MobiDBLite consensus disorder prediction 20 39 - -
Gso2g1165 302 MobiDBLite consensus disorder prediction 286 302 - -
Gso2g1165 302 MobiDBLite consensus disorder prediction 1 77 - -
Gso2g1165 302 MobiDBLite consensus disorder prediction 114 302 - -
Gso2g1165 302 MobiDBLite consensus disorder prediction 175 189 - -
Gso2g1165 302 PANTHER HISTONE H1.1 2 201 - -
Gso2g1165 302 PANTHER HISTONE H1.1 173 299 - -
Gso2g1165 302 SUPERFAMILY "Winged helix" DNA-binding domain 51 129 IPR036390 -
Gso2g1165 302 CDD H15 52 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1165 Gso-Chr2 14580955 14582428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1165 56 123 Single Myb Histone (SMH) Gene Family AT1G72740 38.235 1.18e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1165 K11275 - gmx:100775944 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1165 2 14580955 14582428 Gso2g1165 2 14580955 14582428 ECH
Gso2g1165 2 14580955 14582428 Gso10g0282 10 2984556 2986016 GST