Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1160 ATGGAATTCCCCAAGAAGCGCAAAACCCAAGAGAACGGCGACACCACCACCGACTCTCCGCCGCCGCAATCCACCGAAGAAGCCCCCCTCGCCGCCGCAACCCCGGCCCCCGCCTCCCCCCTCGCATCTGAAGACATCCGCAAGATCCTGCAACCGTTCTCCCAGGAACAGCTCCTCGACCTACTCCAGTCGGCGTCGCTCCGCCACCCCGACGTCCTCGACGCCGTGCGCGCCGTCGCGGACTGCGACTCGACCCTCCGGAAGCTCTTCGTGCGCGGACTCGCCGGCGAGACCACGACGGAGACGCTCCGCAGCGTGTTCTCGGGGTTCGGCGAATTGGACGAGGCTATCGTGATCATGGACAAGGCCACCGGAAGGTCCAAGGGCTACGGCTTCGTCGTGTTCCGCCATGTGGACGGCGCAATTCTCGCCCTCAAGGACCCCAGCAAGAAGATCGACGGCCGCATGACAGTCACGCAGCTTGCCGCCGCCGGTGGTCCCGGCGGCGGTGACGTGTCGCTCCGCAAGGTCTTCGTCGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGTGGCAAAAGCAGAGGCTTTGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGTTGGTTGAACCTTTGAAAACTATTGAAGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAACAAAAAGACGAAACCTTTTGGAACGGATCAGCATCAACATCAGCAGCAACATCCGCAGCAACAGATGCAGCAGCAAGTTTCTATGATGGTGCCTCAGTATGGTGGATATGGTGGTAATGGTTATGGGATGCAGCAGCAGCAGCATCAGGTGCCACCGTATAATAACCAAGTTCCGGTTGCCGGTGGTGGTGGGTATGGCCATCGATATGGCAATTCGCAGATGGCTGGGCCGGTATCTGGTGACTATGGTGCGAGGGTGCCTCCCAATTCTGGTGGGGGTTACCCTGATGGCTCGCAGTATGGCTTCCCTCCTTCGTCGGGGCATCCGCCGCAGCCGCGGGTTCCGATGGCGAGACCTCCTGGTGGAATGTACCAAGGCGCACCACCCTATTATTGA 1155 0.5948 MEFPKKRKTQENGDTTTDSPPPQSTEEAPLAAATPAPASPLASEDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADCDSTLRKLFVRGLAGETTTETLRSVFSGFGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNKKTKPFGTDQHQHQQQHPQQQMQQQVSMMVPQYGGYGGNGYGMQQQQHQVPPYNNQVPVAGGGGYGHRYGNSQMAGPVSGDYGARVPPNSGGGYPDGSQYGFPPSSGHPPQPRVPMARPPGGMYQGAPPYY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1160 384 MobiDBLite consensus disorder prediction 1 40 - -
Gso2g1160 384 CDD RRM_RBM24_RBM38_like 87 161 - -
Gso2g1160 384 SUPERFAMILY RNA-binding domain, RBD 86 167 IPR035979 GO:0003676
Gso2g1160 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 257 IPR000504 GO:0003723
Gso2g1160 384 MobiDBLite consensus disorder prediction 317 384 - -
Gso2g1160 384 Gene3D - 4 171 IPR012677 -
Gso2g1160 384 SMART rrm1_1 88 160 IPR000504 GO:0003723
Gso2g1160 384 SMART rrm1_1 176 248 IPR000504 GO:0003723
Gso2g1160 384 SUPERFAMILY RNA-binding domain, RBD 171 261 IPR035979 GO:0003676
Gso2g1160 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 234 IPR000504 GO:0003723
Gso2g1160 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Gso2g1160 384 PANTHER GEO13361P1-RELATED 1 356 - -
Gso2g1160 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Gso2g1160 384 Gene3D - 172 303 IPR012677 -
Gso2g1160 384 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1160 Gso-Chr2 14509854 14515283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1160 171 348 C2H2 Transcription Factor Family AT2G19380 27.179 3.49e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1160 K12741 - gmx:100816590 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1742 7 39658874 39668661 Gso2g1160 2 14509854 14515283 GST