Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1158 ATGGTTTACTCCTTCTATGACAAAACCTCTTCTTCTTCTTCTGGCTCCGATATTTCGGGGTTGTTCAATCCTACTTTGCATAACCTTGGAGCCTGCAATGACTTGTCATCATCACCACATTCTTTGGTATTTGAGAGTGATAAGGGAGAGCTGGTGAAGTGCCTTGCAGCTGCAAAGGTAGGGAAGAGTGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAACCACAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTGCCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATTAGCCAAGTGAAGGAGTTGAAGAAAAATGCAGCGGAAGTAAGCAAGGGTTTTCTGATTCCAAAGGATGCTGATGAAGTGAAAGTTGAACCATATAATGATCATGAAGGAGGAGAAGGATCCATGTCTTACAGTGCAACTATCTGCTGTGATTTCAGACCTGAAATACTATCTGACCTAAGACAGACCCTTGATTCCCTTCCACTGCATCTAGTCAAGGCAGAAATTTCAACTTTGGCAGGTAGGATGAAGAATGTGTTTGTCTTCACTTGTTGCAAAGAAAACATTAATAATATTGATTTTGAAAAATGCCAAGCTCTTGCAAGTACTGTTCACCAGGCACTATGTTCTGTGATGGAAAAGGCTTCTGCCTCACTGGATTTCTCACCAAGAACATCACATGCAAGCAAGAGGAGAAGACTATGCTTTATTGAAACATCCAATTCCACATGCAACCATGGGTCTTGTTTGTGCTGA 819 0.4286 MVYSFYDKTSSSSSGSDISGLFNPTLHNLGACNDLSSSPHSLVFESDKGELVKCLAAAKVGKSEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVISQVKELKKNAAEVSKGFLIPKDADEVKVEPYNDHEGGEGSMSYSATICCDFRPEILSDLRQTLDSLPLHLVKAEISTLAGRMKNVFVFTCCKENINNIDFEKCQALASTVHQALCSVMEKASASLDFSPRTSHASKRRRLCFIETSNSTCNHGSCLC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1158 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 126 IPR036638 GO:0046983
Gso2g1158 272 CDD ACT_UUR-ACR-like 161 229 - -
Gso2g1158 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Gso2g1158 272 PANTHER TRANSCRIPTION FACTOR BHLH30 3 265 IPR045847 GO:0003700|GO:0006355
Gso2g1158 272 SMART finulus 78 127 IPR011598 GO:0046983
Gso2g1158 272 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Gso2g1158 272 Gene3D - 69 130 IPR036638 GO:0046983
Gso2g1158 272 PANTHER DNA BINDING PROTEIN-LIKE 3 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1158 Gso-Chr2 14500538 14504831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1158 58 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.939 9.43e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1158 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1158 - - gmx:100818879 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1744 7 39672048 39676058 Gso2g1158 2 14500538 14504831 GST