Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1140 ATGAACGTCACCCTTGTTGATTCCGCGCTCTTCGCGTTTCTCTTCCCCTCGCTGTGGGAGATCGAAGTCGCCGTCGCCGCCTCCGTCTTCGTCATCCTCGCCTACCGCTTCTTCACCGCACGGACCGGATACGCCGATCCGTCGCTCGCCGACAGTTCCGCCGCCGACGTCGCCGACGATAAGGACAAGATGGGGCAGTCTAAAGTGGATTCTCAAGCCAGTTCGGCGTACCTGATCAAGTTAGAACTGTTGGCTGCCAAGAATCTTGTCGGTGCAAACTTAAATGGAACATCGGATCCTTATGCTATAATCACTTGTGGCAATGAAAAGCGATTCAGCTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCTTCTTATAAAAACAATAAAACTATCTGGAAATGCTTCCAGGATAAATGGTTATGGGGGAGCCAACCCTCGAAGAAGGATGCCTCCCTTGGAAAGACAGTGGCCCACTGTAGTCCATCAAAAGCCAGGCCCTCTTCAAACTATATTTGATCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATACGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATATGTTTGCATCATTTTGGAACAGGAATCATGCATTCAGAAATCTACAGCGTGCAGCAAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCTGCGTGCACATAGTAGTTCTGTCAGAGGAAATAAGATACTAGATAAGGCTCCTGAAGAAAGCATGCCAAAAACTGGAAAACTTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGCATATACAATGAAGTTTTTCCCTGCACAGCTGAGCAGTTTTTTAACTTGTTATTGAATGATGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTTTGATGGGTCAGTGGCATACAGCAGATGAATATGATGGACAAGTCCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCTCCAGACACAGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGACAAACCTGGTGTTTGAGACTGTGCAACAGGCACATGATGTTCCATTTGGATCCTACTTTGAGGTACACTGTAAATGGAGCTTGGAGACAATTAATGAAACCTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGGTCGTATATAAAATCAAATACTCCTAATGACGAGGATGATAAGGCCTCTTCACCACCCCCTGCAGCGACCGGGGAAAGCTAA 1764 0.4427 MNVTLVDSALFAFLFPSLWEIEVAVAASVFVILAYRFFTARTGYADPSLADSSAADVADDKDKMGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLLIKTIKLSGNASRINGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESELRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLLMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKTNLVFETVQQAHDVPFGSYFEVHCKWSLETINETSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPPAATGES* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1140 587 ProSiteProfiles C2 domain profile. 60 175 IPR000008 -
Gso2g1140 587 CDD PH-GRAM_C2-GRAM 237 345 - -
Gso2g1140 587 SMART gram2001c 226 292 IPR004182 -
Gso2g1140 587 CDD C2 79 175 - -
Gso2g1140 587 MobiDBLite consensus disorder prediction 565 587 - -
Gso2g1140 587 Gene3D - 227 346 IPR011993 -
Gso2g1140 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 188 IPR035892 -
Gso2g1140 587 SMART C2_3c 78 174 IPR000008 -
Gso2g1140 587 PRINTS C2 domain signature 94 106 IPR000008 -
Gso2g1140 587 PRINTS C2 domain signature 118 131 IPR000008 -
Gso2g1140 587 PRINTS C2 domain signature 139 147 IPR000008 -
Gso2g1140 587 Pfam VAD1 Analog of StAR-related lipid transfer domain 402 547 IPR031968 -
Gso2g1140 587 Gene3D C2 domain 59 192 IPR035892 -
Gso2g1140 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 9 581 IPR044655 -
Gso2g1140 587 Pfam C2 domain 80 174 IPR000008 -
Gso2g1140 587 Coils Coil 337 357 - -
Gso2g1140 587 Pfam GRAM domain 229 297 IPR004182 -
Gso2g1140 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 9 581 - -
Gso2g1140 587 ProSiteProfiles VASt domain profile. 398 568 IPR031968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1140 Gso-Chr2 14244095 14268514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1140 78 163 C2H2 Transcription Factor Family AT4G21160 25.581 2.44e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1140 - - gmx:100813208 1172.15