Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1129 ATGGAACCACAAAGATTCTCTACTATTCTCGTATCGGAGTTGTTGGAAGAGGATGATGAGAGTGTGACCCTTATGCCTGGTGATATTTTCAAATTCAGCGTTCATGTTTACTATCGCCCTATCAATCCAGGTACTCGGATCCGAGGAAGCTTAGTTCACCGCTCTCCTTCTCGATGCATACCCTGCCACAATTTCTTCCAAGAGGGGAGAGAATTCTTTAGGAGAATGTTGTGGCGCGTACCCCTCTATGTGGAATCTCCTGAGGATATAATAGAAAACCTCATGTCTACCATCGGAGAACGGTTCTTGCATGTTGATGCCGCTGCTTCTCCTTCTCCTCCTCCTCCTTCTTCAGAATCTCCACACCGAGAGATTCCTTTCGAATTGACCATTCTCATATTAGATACTTTTAATCTCGAACTGCATGCAGCTTTGGTGGAAGAGTCTATGCTGAGTTTCAAAATGATCCCAGCATCTAACGAAGCCATCGAAACGTTGTTGAAGAAATCTACGGTTATGACACGGAGCGAGAGTCCTTGTTCTATCTGCTTGGAAGATTTGGAAATCAATGATGAGTGCGGCACAATGCCATGCAAGCATGTGTTTCATTCACAGTGTATTGTGACCTGGCTGCAAACAAGTCATATGTGTGCCTTGTGTCGCTACCCTTTGCCGTTTAAAAAAGATTGTGATTGA 696 0.444 MEPQRFSTILVSELLEEDDESVTLMPGDIFKFSVHVYYRPINPGTRIRGSLVHRSPSRCIPCHNFFQEGREFFRRMLWRVPLYVESPEDIIENLMSTIGERFLHVDAAASPSPPPPSSESPHREIPFELTILILDTFNLELHAALVEESMLSFKMIPASNEAIETLLKKSTVMTRSESPCSICLEDLEINDECGTMPCKHVFHSQCIVTWLQTSHMCALCRYPLPFKKDCD* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1129 231 SMART ring_2 180 220 IPR001841 -
Gso2g1129 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 226 IPR013083 -
Gso2g1129 231 Pfam Ring finger domain 180 221 IPR001841 -
Gso2g1129 231 SUPERFAMILY RING/U-box 172 227 - -
Gso2g1129 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 150 226 - -
Gso2g1129 231 SMART ringv_2 179 221 IPR011016 GO:0008270
Gso2g1129 231 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Gso2g1129 231 PANTHER F6A14.12 PROTEIN-RELATED 150 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1129 Gso-Chr2 14138530 14139389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1129 141 225 C3H Transcription Factor Family AT1G18760 36.047 3.84e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1129 - - gmx:102660303 449.129