Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1121 ATGGGTTCGGTTCCCGCAGAACTGAGCTTGGATTTAAGACCCACTTTCATCCCCAAAACCATCACCGATTTCCTCCGCCACCTCTCCGACAACAACAACCCCCCCGCCACCCTCCACGATTTCCTCGCCCGCCTCGAAGACGAGCTCCGCAAGATCCACGCCTTCAAACGCGAACTCCCCCTCTCCATGCTCCTCTTAAACGACGCAATTTCAGTTCTGAAGGCGGAATCGCAGAAATGCAGGGTCGCGCGTGATTCTGCGCCGGTGCTGGAGGAGTTCATTCCGTTGAAGAAGGAGCGTGGTGATCAGAGCGAGGAGGAGGAGGAAGAGGAGGAGAATGATGATGATGACGACAACGAATGCCGGGATAAGAGGAATTGGATGAGTTCTGTTCAGCTCTGGAATAACAACACTACCACTGCCACCACTAATAATAACAACCCTTCTGATCGCAAACAACTACTTCACAAATTACAAACCAAGAAAAGTGAAGAAGGGCAATCTGTGGTTGAGGATCCTTTTCAGACTTGTAGTAATATAAATGAAGGAAGAAGGGCGTTTATGCCTTTTTCTAGGTACTCATCTTCATCATCATCTGTGCCGGTGACGACAGTGGGACTGGGGGCTGCTGCATCCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGACTTTCTCTTCTGACACCTTCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCAAGGAGCAGTTCCAACAGGGCTGTTTCTTCTTCTTCTCCTCCCATGGTTCAGCCGAGTTTGCGTGCGACTTCACTTCAGCAGACTGCTAGGAAACAGAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGTAGCAACACCAAAGCAAATTAGAGAGCTTATGCAAGTTGATGGCCTGACTAACGATGAAGTGAAGAGCCATTTACAAAAATATCGTCTTCATACGCGGAGAGTTCCAGCTGCAAGTTCTAACCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAGAGTCCTCTTCATTTGGCTGCAGGGTCCCGGGGAGGAACATCCCCAACTGAAGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTTTAGTTGGAAAAGTCATATGCACAAAGCAGGAAAAGTTGATGTATAG 1245 0.4843 MGSVPAELSLDLRPTFIPKTITDFLRHLSDNNNPPATLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISVLKAESQKCRVARDSAPVLEEFIPLKKERGDQSEEEEEEEENDDDDDNECRDKRNWMSSVQLWNNNTTTATTNNNNPSDRKQLLHKLQTKKSEEGQSVVEDPFQTCSNINEGRRAFMPFSRYSSSSSSVPVTTVGLGAAASKEEKEESVMNRLSLLTPSSVKEGCGSRGSRSSSNRAVSSSSPPMVQPSLRATSLQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAASSNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLAAGSRGGTSPTEGDSMEDDEDARSESFSWKSHMHKAGKVDV* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1121 414 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 272 327 IPR006447 GO:0003677
Gso2g1121 414 MobiDBLite consensus disorder prediction 395 414 - -
Gso2g1121 414 MobiDBLite consensus disorder prediction 104 118 - -
Gso2g1121 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 408 IPR044787 GO:0003700|GO:0006355
Gso2g1121 414 MobiDBLite consensus disorder prediction 95 123 - -
Gso2g1121 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 329 IPR017930 -
Gso2g1121 414 MobiDBLite consensus disorder prediction 353 371 - -
Gso2g1121 414 Gene3D - 271 329 - -
Gso2g1121 414 SUPERFAMILY Homeodomain-like 269 330 IPR009057 -
Gso2g1121 414 MobiDBLite consensus disorder prediction 228 267 - -
Gso2g1121 414 Pfam Myb-like DNA-binding domain 274 325 IPR001005 -
Gso2g1121 414 PANTHER TRANSCRIPTION FACTOR HHO6 7 408 - -
Gso2g1121 414 MobiDBLite consensus disorder prediction 353 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1121 Gso-Chr2 14016741 14019778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1121 6 348 G2-like Transcription Factor Family AT2G03500 38.462 1.58e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso2g1121 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1121 - - gmx:100806237 730.324