Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1065 ATGGAGAAAGATCACAACTATTCGACACCACCACCACCACCGTTATCTATGCCTCCAAGCTTCAACACACTAGACTACTCTCTAGACCAACAACAACATCATCATTTGTACGCACCAAATCAACACCAACAACACCTGATGATGAAGTTCCAACAAGGTTCTGGTGATGAAAACAACAATATTGGATCAATGGTGGATTACATGCCTCAAACAACAACAACACTACCCCCACATGGTTTTTATGGTACTGCTACCAGTGCTGCCACAACATCCTATGACAAACTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCGAAGTTGGCTTTGAACCAAGCAAAAAGCTGTGAAGAATCTGCAATAGACCCGGTTTATTTTCTTAAGTTTCCCGTGTTGAACGACAAGATGGAGGAGGATCATCAGCAGAACATGATGGTGAATAATGATGACCCTGATGGTGATGAAGCAGAAAATCATCATCATCTTGATGAGAGGTTCAATTTGGTGAGTGTGGAAGGCAAAGATCAGGGAATGATGATGAGAGAAGATGAAGAGACAACTCGTGTTTCCGACGACAACAACAACTCGGTGCAGATTCGGTTTCTTGGACACGAAGAGCCTCAGCAGAAGAATTGTGCAGTGCAGGAGAACAAGAACGGCAAGAAGAAGAGACCAAGAACTGTTAAGACGAGTGAGGAGGTTGAGAGCCAGCGCATGACTCATATAGCGGTTGAAAGGAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAATGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCCTCTCTTGTGGCACAACAACAACAACAGCCTCCATTCTTTCCAACTTTGCCTATTCCAAACGAGCAGATGAAGCTTGTGGAGATGGAGACTGGCCTCCGCGAAGAAACCGCAGAGTGCAAGTCTTGTTTGGCCGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTACAACTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA 1341 0.4444 MEKDHNYSTPPPPPLSMPPSFNTLDYSLDQQQHHHLYAPNQHQQHLMMKFQQGSGDENNNIGSMVDYMPQTTTTLPPHGFYGTATSAATTSYDKLSFADVMQFADFGPKLALNQAKSCEESAIDPVYFLKFPVLNDKMEEDHQQNMMVNNDDPDGDEAENHHHLDERFNLVSVEGKDQGMMMREDEETTRVSDDNNNSVQIRFLGHEEPQQKNCAVQENKNGKKKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLVAQQQQQPPFFPTLPIPNEQMKLVEMETGLREETAECKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1065 446 MobiDBLite consensus disorder prediction 1 24 - -
Gso2g1065 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 289 IPR011598 GO:0046983
Gso2g1065 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 304 IPR036638 GO:0046983
Gso2g1065 446 PANTHER TRANSCRIPTION FACTOR FAMA 41 446 - -
Gso2g1065 446 Gene3D - 230 304 IPR036638 GO:0046983
Gso2g1065 446 PANTHER TRANSCRIPTION FACTOR FAMA 41 446 IPR044283 GO:0003700|GO:0010052
Gso2g1065 446 CDD ACT_UUR-ACR-like 372 436 - -
Gso2g1065 446 CDD bHLH_AtFAMA_like 241 308 - -
Gso2g1065 446 Pfam Helix-loop-helix DNA-binding domain 239 290 IPR011598 GO:0046983
Gso2g1065 446 SMART finulus 244 295 IPR011598 GO:0046983
Gso2g1065 446 MobiDBLite consensus disorder prediction 218 240 - -
Gso2g1065 446 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1065 Gso-Chr2 12993050 12997063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1065 52 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.865 3.55e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1065 HLH 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1065 - - gmx:100793349 857.055