Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1035 ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAACGAGGATCATGTGAGTTATTCTAGCGGAATGCACTCGGATTGGAGATTTGGGGGTTCAAATCTTGCAAATTCTTCGGTAGGTTTTGTTGGCTTGGGGAATAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCACTTAGTCCAAATTACTGGGAAAACCCCACCAGCTCCCAAAAGTTGGGATTTTGTGACATTAATAATGTCCACAACAATGGGGGCTCTTCAAGCACAGTTGCAATCAGAAAAGATGGATTTGGATTTGGAAGAGTTGGTCAGGATCATCATGGAACACTTGAAATGGGTTGGAATCATGCTAATTCTATGTTACCAAATGGACCAGTGATGTTTCCCCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGGTTCTCGTGCTTCAGTGGAGGGAATTTTGGTGACATGGTGAACTCATATGGGATTGCTCAATCCATGGGGCTGTATGGAGCAAGAGATGCTATTGCAGGCCATGGGTTGAAATCAGTAATAGCTGGAGGACAATCTCAAGGAGGTGATATGAATGTAGTTGAGGATGTGCCTCCATCTGTTGAGCATCTTGTTGCTGCTAAAGGAAGCCCTCTCAAGAGTGATAGAAGAAGTGAAGGTCATGTTATATTCCAAGATGAAGGGAAGCAATCTCTTGTTAGGAATGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGCCAGGATGATTCCCCAATGTTGGAAGGTACTAGTGGGGAACCTTCTAGCAAAGGACTAAACTCAAAGAAAAGGAAAAGAAGTGGACGGGATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGTGCAAAGGGGAACTCTGAGAATCAACAGAAGGGAGACCAACAACCAATTTCAACAGCCAACAAGGCTTGTGGGAAGAATGCCAAATTGGGGTCTCAAGCTTCTGATCCACCTAAGGAGGAATACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCCTGATCCTTCAACCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGCTGATTCATCCAGTAATTCCCAACATGACAAACTCATCTGATATTCTTCAAAGAACCATCCATCCACAGTTAGCTCCCTTGAATGGTGGATTCAAGGAACCAAATCAGCTGCCTGATGTATGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGA 1656 0.439 MSDKEKFEVDRNEDHVSYSSGMHSDWRFGGSNLANSSVGFVGLGNNSMNVSRGDLIGSSSCSSASMVDSLSPNYWENPTSSQKLGFCDINNVHNNGGSSSTVAIRKDGFGFGRVGQDHHGTLEMGWNHANSMLPNGPVMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIAQSMGLYGARDAIAGHGLKSVIAGGQSQGGDMNVVEDVPPSVEHLVAAKGSPLKSDRRSEGHVIFQDEGKQSLVRNANESDRAESSDDGGGQDDSPMLEGTSGEPSSKGLNSKKRKRSGRDGDNDKANGAQELPSEGAKGNSENQQKGDQQPISTANKACGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPDPSTALGFPLDMSMAFPPLHPPQPGLIHPVIPNMTNSSDILQRTIHPQLAPLNGGFKEPNQLPDVWEDELHNVVQMSFATTAPPTSQDVDGTGPASQMKVEL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1035 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 433 IPR036638 GO:0046983
Gso2g1035 551 MobiDBLite consensus disorder prediction 227 242 - -
Gso2g1035 551 MobiDBLite consensus disorder prediction 251 266 - -
Gso2g1035 551 Gene3D - 361 434 IPR036638 GO:0046983
Gso2g1035 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983
Gso2g1035 551 Pfam Helix-loop-helix DNA-binding domain 367 415 IPR011598 GO:0046983
Gso2g1035 551 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 550 IPR024097 GO:0006355
Gso2g1035 551 MobiDBLite consensus disorder prediction 226 333 - -
Gso2g1035 551 PANTHER BHLH TRANSCRIPTION FACTOR 11 550 - -
Gso2g1035 551 MobiDBLite consensus disorder prediction 528 551 - -
Gso2g1035 551 MobiDBLite consensus disorder prediction 528 542 - -
Gso2g1035 551 SMART finulus 370 420 IPR011598 GO:0046983
Gso2g1035 551 MobiDBLite consensus disorder prediction 312 333 - -
Gso2g1035 551 CDD bHLH_AtBPE_like 354 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1035 Gso-Chr2 12304570 12309139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1035 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.778 3.47e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1035 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1035 - - gmx:100783810 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1035 2 12304570 12309139 Gso2g1035 2 12304570 12309139 ECH