Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1009 ATGGGTAGCTGTTTTTCGTGTTTTGAGAGAACGCATCCTCATGATCAAGAAGAAACTGCTGATGATGCCGAGGTTGATCATGAAGCTGAAGCGATTTTTCGACTTGCTTTAGCTGAATGTTTTAATAATGCTGCTGAAAATTCTGTATCTGTGATACCTAGATCAACCAACAGTTCGAAACGTTTTGGATCCGTCCATTCAAACTCCTCCGATGGGGATGCCTGTCCTACATGTTTTGAAGGATATACTGAACAGAATCCTATGATCATAACTAAGTGTGGGCACCATTTCCACCTTAGCTGTATACTTGAGTGGCAGGAGAGACGTGAAACTTGTCCAATTTGTAGGAAGTTACTTTACTTAAAACTATCAAATGCCCTTTTGTCCCTCTCTGGATTTGCAGGTGGTTGA 411 0.4136 MGSCFSCFERTHPHDQEETADDAEVDHEAEAIFRLALAECFNNAAENSVSVIPRSTNSSKRFGSVHSNSSDGDACPTCFEGYTEQNPMIITKCGHHFHLSCILEWQERRETCPICRKLLYLKLSNALLSLSGFAGG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1009 136 SMART ring_2 75 115 IPR001841 -
Gso2g1009 136 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 31 118 - -
Gso2g1009 136 SUPERFAMILY RING/U-box 71 123 - -
Gso2g1009 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 119 IPR013083 -
Gso2g1009 136 ProSiteProfiles Zinc finger RING-type profile. 75 116 IPR001841 -
Gso2g1009 136 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 31 118 - -
Gso2g1009 136 Pfam Ring finger domain 74 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1009 Gso-Chr2 11888283 11890901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1009 11 119 C3H Transcription Factor Family AT5G15790 40.678 9.95e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1009 - - gmx:106797235 269.626