Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1005 ATGGAATCTTGGAGTTATGTCCCCGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTCATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCCAACTTTGTTGAGAAAGATGGATTTAATTCAGACAGAGAGGTAGTTAGAAGCATGGAATTTGTGGATTTGGGATTCCCTGACTTGTTGCAAAAGTCTTTTCATGGAAGCCAGCCTCTAGAGACATCTAGCTATGAACTAGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCCCCACATGTCATTGCCTTGGATTCTTCTATGGGGGAAGAGGAATCCGATTCAAAGCATTTGAGTTCTCTAGTTGAATCCAAGACTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGTAGTGATAAAGTTGCAAAAGAAGGGTTCACTTTAACATCTATACATCCGACCACACTTTGGAAGAGAGCTCGCACTTCCAGCTTGCCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCTAAAGTTATTGTAAATGGAATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTTCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCCCAATTTGATTACGTGACTGGTAAACAGCACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTGGGGTCTTCATTACAGAATAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGCAGCATCCTTTTCCCCGGAAAGCATGCTCAATTCTCTCAGAGTGGACGTGTCAAACTGGAAGAGGACTCGATTTACGGTTCCCAACTTGCTGCACCGGTCACACTTGATCAGGAATCATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCGTCATGCCACGCAGCAGGCAATCCATTAGCCAGTCCCCAAGTCTTTAGTGGCATCCGCATACCCGACAGAGACAGCCGAGTTTCCAAAAAGCCTTTGAGGATAAGCCCTGCAGATAAACTTGCACCAAATGAGTCCTTTCCATGTGATACAATCTCCAAGGAAGTTATCAAGAATAGATCCGCCGCAACATTTTCCAGTGTTGGTCATGCTCTTGAAGTCCATAATGGAGATGATATCTGCCAACCATCAGAGTTGTTCAGCATTAAACACAGTCTTTCCTCGGAACATGCAGCCACGGTTGATTTGTTCCAATTGTCTTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTGTGA 1449 0.43 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNFVEKDGFNSDREVVRSMEFVDLGFPDLLQKSFHGSQPLETSSYELDSNNSSKRGNSSPHVIALDSSMGEEESDSKHLSSLVESKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSIHPTTLWKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYVTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSSILFPGKHAQFSQSGRVKLEEDSIYGSQLAAPVTLDQESSSCALSLLSDQSQYPSCHAAGNPLASPQVFSGIRIPDRDSRVSKKPLRISPADKLAPNESFPCDTISKEVIKNRSAATFSSVGHALEVHNGDDICQPSELFSIKHSLSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1005 482 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Gso2g1005 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 333 481 IPR044817 GO:0003677
Gso2g1005 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 323 IPR044817 GO:0003677
Gso2g1005 482 MobiDBLite consensus disorder prediction 80 120 - -
Gso2g1005 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 333 481 - -
Gso2g1005 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 323 - -
Gso2g1005 482 MobiDBLite consensus disorder prediction 80 103 - -
Gso2g1005 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Gso2g1005 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
Gso2g1005 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1005 Gso-Chr2 11801984 11808528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1005 95 480 SBP-box Gene Family AT1G69170 38.734 6.10e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso2g1005 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1005 - - gmx:100820149 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1005 2 11801984 11808528 Gso2g1005 2 11801984 11808528 ECH
Gso1g0533 1 9196864 9202769 Gso2g1005 2 11801984 11808528 GST