Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1003 ATGAACCACGAAGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAGTTCTCAAAGCCAAAGCGTTGATCACACCCTCAGTCTGCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCATCTTCATCTTCCTCACCAACAACATCTAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCTGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAACTAAAGTTAATGCTGATTGA 522 0.477 MNHEDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPSSQSQSVDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSATKVNAD* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1003 173 MobiDBLite consensus disorder prediction 82 103 - -
Gso2g1003 173 SUPERFAMILY HMG-box 100 154 IPR036910 -
Gso2g1003 173 PANTHER PROTEIN YABBY 6-RELATED 7 169 IPR006780 GO:0007275
Gso2g1003 173 CDD HMGB-UBF_HMG-box 117 153 - -
Gso2g1003 173 Gene3D High mobility group box domain 89 160 IPR036910 -
Gso2g1003 173 MobiDBLite consensus disorder prediction 82 112 - -
Gso2g1003 173 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Gso2g1003 173 PANTHER PROTEIN CRABS CLAW 7 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1003 Gso-Chr2 11778192 11780633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1003 1 167 C2C2-YABBY Transcription Factor Family AT1G69180 64.912 4.15e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso2g1003 YABBY 1.6e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1003 K25796 - gmx:100819079 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0531 1 9163282 9165730 Gso2g1003 2 11778192 11780633 GST