Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0987 ATGGAAAGCTGTGCCAGCAATAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCTTCACTTTTCTCACCAAGCCCAAAAGCTTGGCCTTAAGTGGCCAAGAGGATTGCTGCTGTATGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACCGTTATCAGTCCACACTCTGTTCATAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGCGAGGCATTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGCCATCGGTTATCTTTATAGATGAAATAGATGCACTCTGTGCTCGTCGAGATTCCAAAAGGGAGCAAGATGTCCGAGTTGCCTCCCAACTCTTTACTCTGATGGACTCAAATAAACCAACCTTTTCTACACCAGGTGTAGTTGTGGTTGCGTCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGATGACCGCTTTCAAATTCTGAAGTTGTATACAAAGATGATTCCCTTGGATCCCGTTCTTGACTTAAAGTCTATTGCTGCATTGTGCAATGGATATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGTATGCAATTAAAAGATCTTCAAATACAAAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGCATGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAATTGAAGAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCTCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTGCTTCGTAAAACATTTCAGAGAGCACGCCTTGCGGCACCTAGTATAATATTCTTTGATGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGCTCTAGCAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTCATGCGTCCTGGGCGTTTTGATCTGGTTCTGTATGTACCACCACCTGATTTGGAGGCTCGGCATGAGATTCTTTGTGTACATACGCGTAAGATGAAAACAGGGAATGATGTTGATCTCAGAAGGATAGCAGAAGACACAGAGCTCTTCACAGGTGCTGAACTGGAGGGATTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCCGCCGTTGTTTGTGACCGCCATTTCCAGATTGCGAAGAGTTCTTTAAAACCAGCATTAACAAAGTCAGAAATTGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCTGGCCACTTTGAAGCAGGTTTGAAACCAGACAAAAGCAAAAAGAACAGGTTGGATCCTTTTTCTTTGGTCAAAATTGGAGTTGTCAGCTGTTTGTTACTTGCTGCTGCTGCTGCTGCAGCTGAATACTATATCATGTATGGAGACCAAATTGTACATGATATAGCTACTTGA 1821 0.4432 MESCASNNHWRAEEAIGGNAEALQALRELIIFPLHFSHQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMDSNKPTFSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQILKLYTKMIPLDPVLDLKSIAALCNGYVGADLEALCREATMYAIKRSSNTKDASNFSLTMEDWKHARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKVQQAVEWPIKHSAAFSRMGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARHEILCVHTRKMKTGNDVDLRRIAEDTELFTGAELEGLCKEAGIVALREDISAAVVCDRHFQIAKSSLKPALTKSEIDSYSSFMKTSSRALPGHFEAGLKPDKSKKNRLDPFSLVKIGVVSCLLLAAAAAAAEYYIMYGDQIVHDIAT* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0987 606 CDD AAA 17 185 - -
Gso2g0987 606 Gene3D - 3 186 IPR027417 -
Gso2g0987 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 540 IPR027417 -
Gso2g0987 606 Gene3D - 270 454 IPR027417 -
Gso2g0987 606 Pfam AAA+ lid domain 475 520 IPR041569 -
Gso2g0987 606 Pfam AAA+ lid domain 210 251 IPR041569 -
Gso2g0987 606 CDD AAA 286 453 - -
Gso2g0987 606 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 19 529 - -
Gso2g0987 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 269 IPR027417 -
Gso2g0987 606 Gene3D - 455 546 - -
Gso2g0987 606 Pfam ATPase family associated with various cellular activities (AAA) 51 185 IPR003959 GO:0005524|GO:0016887
Gso2g0987 606 Pfam ATPase family associated with various cellular activities (AAA) 320 452 IPR003959 GO:0005524|GO:0016887
Gso2g0987 606 SMART AAA_5 47 189 IPR003593 -
Gso2g0987 606 SMART AAA_5 316 455 IPR003593 -
Gso2g0987 606 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 55 74 - -
Gso2g0987 606 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 401 420 - -
Gso2g0987 606 ProSitePatterns AAA-protein family signature. 423 441 IPR003960 GO:0005524|GO:0016887
Gso2g0987 606 Gene3D - 188 269 - -
Gso2g0987 606 PANTHER AAA-FAMILY ATPASE 19 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0987 Gso-Chr2 11504185 11512339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0987 251 575 Calmodulin-binding Proteins AT3G56690 42.378 5.40e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0987 - - gmx:100814288 1161.75