Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0979 ATGGCAAAAAAAGCTGTGTTTTTTCTTCTTCCCCACAGAGCTTTTTCTTCCTCAACCACAGAAACCCCCACCCTTTACTCCTTCCTTCAGCCCTCAGTCTTTGCTCTCACCAAAAAACAACACCAACCCAATTCAGAGCCTTCTCCAAAGTCCCCAACTTTACTCTCTTCTTCCCAACTTTCCACTCTCCAAACCACCCTCCAAAACTCCCTCACAAGAAGCAACACTGATGAGGCATGGAAATCCTTCAAAACCCTCACCACTCACCACTCCTTCCCTCCCAAAACCCTAACCAATTCCCTCCTCATCCACCTCTCCTCCCTTGGTGACACCCTCAACCTCAAGAGGGCCTTTGCCTCCACCCTCTTCCTCATGGAGAAGAACCCCATGCTCATTGACCATCATACCCTCCATCAAATCTTGCTCTCCATGAGGGATGCCAACACTGCTGCACCAGCCTTTGCACTTGTCAGGTGCATGTTCAGGAACAGGCTCTTTGTGCCCTTCCATGTGTGGGGCCCTGTGCTGGTTGAGATCAGTAGGAAGAACAATGGTGGCGGCCTTGGTGGTGCTTTTTTGAGGGTCTTTGAGGAGAATTGTTGGGTGGCTCTTGAGGAGAGGATTGAGTTCATGAAGCCTGATGTTGGTGCTTGCAATGCAGCTCTGGAAGGTTGCTGCTGTGAGCTTGAGTCTGTGAGTGATGCTGAGAGGGTTGTTGGGACGATGTCAAATCTAGGGATTAGGCCTGATGAGTTCAGTTTCGGGTTTCTTGGGTATTTGTATGCACTCAAGGGGTTGGAAGAAAAGATAAGGGAGTTGGAGGTTTTGATGGGTGGGTTTGGTTGTTTGAACAAGAAGTGGTTCTATTGTAGTTTGATTAGTGGGTATATTAAGTCAGGGGATTTGGCTTCTGTGGAGGCAACTGTTGTTAAATGTCTTGGTGATGGAGGTGGTGGGAAGGATTGGGGTTTTGGTGTTGAAACTTTCTGTGAAGTGGTTAAGGCTTATTTTCAGAAGGGAAATATCAAGGGGTTGGCTAGTTTGATTGTTGAAGCTCAGAAGTTAGAGGGTTCGGATATTATGATTGATAAGTCTATAGGGTATGGTATTGTTAATGCGTGTGTTAATATTGGACTATCTGATAAAGCACACAGCATTCTTGATGAGATGAATGCTCTGGGGGCTTCTGTGGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGCAAAGAAAATAGAACTGCTGAGGCTACTCAAATGGTGATGGAGATTAGTAATTCGGGTCTTCAGTTGGATGTGGGAACCTATGATGCTTTGGTAGAAGCAGCCATGTGTGCCCAGGATTTTCAGTCAGCGTTTTCCCTGTTCAGGGACATGAGAGATGCAAGGATTCCTGATTTGAAAGGGAGTTACTTAACTATAATGACAGGTTTGATGGAGAATCATCGGCCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAGGATCCTAGGATTGAGGTAGGTACTCATGATTGGAATTCCATCATCCATGCTTTCTGTAAAGCTGGGAGACTAGAAGATGCAAGAAGGACTTTCAGAAGGATGATGTTCCTGCAGTTTGAGCCAAATGATCAGACATACTTGTCCATGATTAATGGATATGTCTTGGCAGAGAAATATTTTCTTGTGCTGATGTTGTGGAACGAGGTTAAGCGAAAGCTATCTTTGGATGGGCAGAAGGGGATCAAGTTTGACCACAATTTGGTTGATGCATTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAAGCTTATGAGATGAGAGTATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACTCATAAAAAGCTCAAAGTGGCAAAGTTAAGGAAAAGGAATTTTAGAAAAATGGAAGCGCTTATTGCTTTCAAGAACTGGGCTGGCTTAAATGCATGA 1977 0.4492 MAKKAVFFLLPHRAFSSSTTETPTLYSFLQPSVFALTKKQHQPNSEPSPKSPTLLSSSQLSTLQTTLQNSLTRSNTDEAWKSFKTLTTHHSFPPKTLTNSLLIHLSSLGDTLNLKRAFASTLFLMEKNPMLIDHHTLHQILLSMRDANTAAPAFALVRCMFRNRLFVPFHVWGPVLVEISRKNNGGGLGGAFLRVFEENCWVALEERIEFMKPDVGACNAALEGCCCELESVSDAERVVGTMSNLGIRPDEFSFGFLGYLYALKGLEEKIRELEVLMGGFGCLNKKWFYCSLISGYIKSGDLASVEATVVKCLGDGGGGKDWGFGVETFCEVVKAYFQKGNIKGLASLIVEAQKLEGSDIMIDKSIGYGIVNACVNIGLSDKAHSILDEMNALGASVGLGVYIPILKAYCKENRTAEATQMVMEISNSGLQLDVGTYDALVEAAMCAQDFQSAFSLFRDMRDARIPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSLDGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKAYEMRVFVDKWRYKQAFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0979 658 Pfam PPR repeat family 508 550 IPR002885 -
Gso2g0979 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Gso2g0979 658 MobiDBLite consensus disorder prediction 38 59 - -
Gso2g0979 658 Pfam PPR repeat 371 392 IPR002885 -
Gso2g0979 658 Gene3D Tetratricopeptide repeat domain 61 354 IPR011990 GO:0005515
Gso2g0979 658 PANTHER BNAC05G43320D PROTEIN 1 658 - -
Gso2g0979 658 TIGRFAM PPR: pentatricopeptide repeat domain 508 539 IPR002885 -
Gso2g0979 658 PANTHER OS01G0788900 PROTEIN 1 658 - -
Gso2g0979 658 Gene3D Tetratricopeptide repeat domain 467 627 IPR011990 GO:0005515
Gso2g0979 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 249 IPR002885 -
Gso2g0979 658 Pfam Pentatricopeptide repeat domain 422 465 IPR002885 -
Gso2g0979 658 Gene3D Tetratricopeptide repeat domain 355 466 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0979 Gso-Chr2 11410709 11413612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0979 211 610 Glycosyltransferase AT1G05670 19.753 2.58e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0979 - - gmx:100811600 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0979 2 11410709 11413612 Gso2g0979 2 11410709 11413612 ECH