Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0966 ATGTTTGGGTTTAGAAAAGCACCAGCACCAACTGAATCAGATAAGAAGACAACCCTTACTGCAGAAAAAAGAACTACTTCAGAACCTGTCCTGCCAGTTGCAAAATCTAAAGGAAACTATTTCGACGATGACGACGACGACTGGGGGAGGAAGCCTTCCTCCTCCACAGCATCAAAGGACAAAGACAGGTACAAGAATGGTTTCAGCAACTCTGGGGGGCTAGAGAACCAAAGTGTTCAGGAGTTGGAAAACTATGCAGTGTACAAGTCTGAGGAGACAACAAACAGTGTCAACAATTGTTTAAGGATTGCTGAGGACATCAGAGGGGATGCCACAAGGACACTTGACATGTTGCATCAGCAGGGTGAGCAGATAACCAGAACTCACAATATGGTTGTTGATACCGAGAAGGATTTGAGCCGGGGTGAAAAACTCCTAAACAATCTTGGTGGCATGTTCTCCAAACCCTGGAAGCCAAAGAAAACCAGAGAAATCCAAGGACCTATAATTACACCAGATAAGCCATCCAAAAAGAATGTACATAATAAGGAAGACAGAGAGAAGTTGGGCTTAGCTCCTTTGCCTAAGGGACGCTCAGCCCCTACCACACCTCCAAATGAATCATCCAATGCCTATCAGAAAGTTGAACATGAGAAAGCTAAACAAGACGATGCACTCGAAGATCTAAGTGGCATCTTAGGTGATTTGAAGGGTATGGCAATTGGCATGGGATCTGAACTTGACAAGCAAAACAAAGCTCTTGATCATCTTGGTGACGATGTGGATGAGTTGAATTCTCGAGTCAAAGGTGCCAACCAGCGTGCACGCAAATTAGTAGGGTGA 843 0.4472 MFGFRKAPAPTESDKKTTLTAEKRTTSEPVLPVAKSKGNYFDDDDDDWGRKPSSSTASKDKDRYKNGFSNSGGLENQSVQELENYAVYKSEETTNSVNNCLRIAEDIRGDATRTLDMLHQQGEQITRTHNMVVDTEKDLSRGEKLLNNLGGMFSKPWKPKKTREIQGPIITPDKPSKKNVHNKEDREKLGLAPLPKGRSAPTTPPNESSNAYQKVEHEKAKQDDALEDLSGILGDLKGMAIGMGSELDKQNKALDHLGDDVDELNSRVKGANQRARKLVG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0966 280 Gene3D - 213 280 - -
Gso2g0966 280 MobiDBLite consensus disorder prediction 176 192 - -
Gso2g0966 280 MobiDBLite consensus disorder prediction 1 79 - -
Gso2g0966 280 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 279 - -
Gso2g0966 280 SUPERFAMILY SNARE fusion complex 212 278 - -
Gso2g0966 280 Gene3D - 73 151 - -
Gso2g0966 280 SUPERFAMILY SNARE fusion complex 77 148 - -
Gso2g0966 280 CDD SNARE_SNAP25N_23N_29N_SEC9N 84 148 IPR044766 GO:0005484|GO:0031201
Gso2g0966 280 MobiDBLite consensus disorder prediction 150 225 - -
Gso2g0966 280 Coils Coil 247 274 - -
Gso2g0966 280 MobiDBLite consensus disorder prediction 38 66 - -
Gso2g0966 280 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 216 278 IPR000727 -
Gso2g0966 280 SMART tSNARE_6 211 278 IPR000727 -
Gso2g0966 280 SMART tSNARE_6 82 149 IPR000727 -
Gso2g0966 280 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 279 - -
Gso2g0966 280 CDD SNARE_Qc 219 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0966 Gso-Chr2 11195225 11199066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0966 206 279 SNARE and Associated Proteins AT3G09740 39.189 9.96e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0966 K18211 - gmx:100806781 561.607