Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0937 ATGGAAGAGACAGAGGACTCAACCAATGCCAACCAGAAATTCACCACCAAAAGAAGGAGCTTCAGGAATGGAGGCAACTCTCATGAGCATCATCATTATCACCATCACCACCACCACCACCACCATCATCATCACTATCAGCACCATCACCATCATCATCAGCTGCTACAATACTCAACTCAGCTTGGCTTTTGCAACAACCAGAACAAGTATCAGAGATACTACCCAGCTCTTCTTCCTCTACCTTCTCTTATACCTCTTCAACAACTTCCTTTGACTCCACCCTTCCCTCCGAACCTCACCATCAAATCAAAAACCCATTTGCGCAAACCTCCATGCATGCTCAATAGCTCCCCGTCCTCAGATTACAAGCTCTCTCAGCCACCACTTGATCCTGTTATGAACCATCTTGTTTCTTACACTGATTCAGCTCCGAAGGAACTTCAGCAGCAAACTAAGGCATCCTTAAAAGGAGATGATGGGAAGAAACTCATTCCAGCAAGGAAGCCACAGGCAGTAATTGTTGCAAGGAGGCCAGACTCTGGTGGCAAAGAAGGTTCTGTGATCTCTCTTCTTGCCAACCACTTTTTGGTGCAATTTGATCCATCACAGAAGATATATCATTACAATGTTGAAATCACTCCTCATCCCTCCAAGGATGTTGCCAGAGCAATCAAGCAGAAGTTGGTAAATAACAATTCTGCGGTCCTCTGTGGTGCTACTCCAGCATATGATGGTAGAAAGAATCTTTATAGTCCAGTTGAATTCCAAAATGACAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAGCTGACTTCACCTTATGGAGAAATGTCTGACTTGAAAGAGAAGCATGAACAGCTTAAACTTTTCAGGATAAATATCAAACTGGTCTCGAAGATCAATGGGAAGGAGTTGAGTAACTATTTGAGCAAAGAGGATGATGATTGGATTCCACTTCCACAGGATTATCTGCATGCTTTGGATGTAGTTCTTAGGGAAAGTCCAACCGAGAAATGCATACCTGTAGGGAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAACGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTGATTGCATACTTGCAGAAGCGCCTCGAGTTTCTTCGAGACCTGTCTCAAAGAAAGACAGCTCAATTAACCGGTGAAGAGAGGAAGGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTCGTTTGCCATAGAGAAACTGTTCAACGATATCGTGTCTATGGCTTGACTGAGGAGGTTACTGAAAATCTTTGGTTTGCTGACAGAGATGGGAAGAATCTGAGGTTGGTGAATTACTTTAAAGATCAGTATAACTATGACATACAATTCAGAAAACTGCCATGCTTGCAAATTAGTAGGAGTAAGCCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGGAAACTGTCTGATGATCAAACAGCAAGAATACTCAAAATGGGCTGCCAAAGACCGGGAGAACGAAAAACCATTGTCGAAGGAGTCATGAGAGGAACTGTTGGGCCTACCAGTGGTGATCAGGAAAAAGAATTCAAACTCCAAGTATCAAGAGAAATGACAAAGTTGACTGGTAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACTCCTTCACGTCACGACTGCCAGTGGAACCTTCTTGATGGACATGTCTTCGAAGGAACTACAATTGAAAGGTGGGCACTAATTAGTTTTGGGGGCACACCTGACCAGAAGTCCAATGTCCCCAGATTCATAAACCAGTTATGTCAAAGGTGTGAACAATTGGGCATTTTTCTTAACAAGAACACAGTTATTAGTCCCCAGTTTGAATCAATCCAAATTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGGATCCTGAGGACAGCCTCAAACAATCTCCAGCTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCTGAGACAAGTGTTGGTGTTGTGAGCCAATGCTGCCTGTACCCCAATCTCAACAAGTTGAGTTCACAATTTTTGGCCAATTTGGCCCTCAAAATCAACGCCAAAGTTGGTGGATGCACAGTTGCCTTGTACAACTCATTGCCATCGCAGTTACCGCGCCTCTTTCATATTGACGAGCCGGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTAGATGATGTCAGTCCATCTGTCGCTGCTGTCGTCGGCAGCATGAATTGGCCAACAGCAAACAAGTACATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATCATCCTGGACCTAGGCGCAATGGTGGGGGAGTTGCTTGATGATTTTTACCAGGAGGTAGAGAAACTCCCTAACAGAATCATTTTCTTCCGAGACGGGGTCAGTGAAACTCAGTTTTACAAAGTGCTGGAAGAGGAACTTCAATCCATCAGGTGTGCATGCTCAAGGTTTCCTGGCTACAAACCTACCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAGTCTTCAACTCAAAAAAACAATTTTCTATATGAAAACATTCCTCCAGGGACTGTGGTTGATTCTGTGATCACTCATCCAAAGGAGTTTGATTTCTATCTTTGTAGCCATTGGGGTGTTAAAGGAACAAGTAGGCCAACTCACTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTTCAGAAACTGGTTTACAACTTGTGCTACACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTGCCTCCTGCATATTATGCACATTTGGCTGCATATAGAGGCAGACTCTACCTTGAGAGATCAGAGTCCTTAGGTTTATTCAGAAGCACATCTACACTATCCAGAGCTGCTCCTCCAAAGACAGCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTATTGCTAG 3129 0.435 MEETEDSTNANQKFTTKRRSFRNGGNSHEHHHYHHHHHHHHHHHHYQHHHHHHQLLQYSTQLGFCNNQNKYQRYYPALLPLPSLIPLQQLPLTPPFPPNLTIKSKTHLRKPPCMLNSSPSSDYKLSQPPLDPVMNHLVSYTDSAPKELQQQTKASLKGDDGKKLIPARKPQAVIVARRPDSGGKEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDVARAIKQKLVNNNSAVLCGATPAYDGRKNLYSPVEFQNDKLEFYISLPIPTSKLTSPYGEMSDLKEKHEQLKLFRINIKLVSKINGKELSNYLSKEDDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIAYLQKRLEFLRDLSQRKTAQLTGEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNLRLVNYFKDQYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIVEGVMRGTVGPTSGDQEKEFKLQVSREMTKLTGRILHPPKLKLGDGGHVRNLTPSRHDCQWNLLDGHVFEGTTIERWALISFGGTPDQKSNVPRFINQLCQRCEQLGIFLNKNTVISPQFESIQILNNVTLLESKLKRILRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLNKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDVSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIILDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLEEELQSIRCACSRFPGYKPTITFAVVQKRHHTRLFPFETDQSSTQKNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSTSTLSRAAPPKTAPLPKLSENIKKLMFYC* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0937 1042 ProSiteProfiles PAZ domain profile. 404 513 IPR003100 GO:0005515
Gso2g0937 1042 SUPERFAMILY Ribonuclease H-like 684 1003 IPR012337 -
Gso2g0937 1042 ProSiteProfiles Piwi domain profile. 692 1003 IPR003165 GO:0003676
Gso2g0937 1042 SUPERFAMILY PAZ domain 391 549 IPR036085 GO:0005515
Gso2g0937 1042 CDD PAZ_argonaute_like 407 512 - -
Gso2g0937 1042 SMART PAZ_2_a_3 404 535 IPR003100 GO:0005515
Gso2g0937 1042 SMART DUF1785_2 344 396 IPR014811 -
Gso2g0937 1042 Pfam Piwi domain 693 1000 IPR003165 GO:0003676
Gso2g0937 1042 Gene3D - 764 1042 IPR036397 GO:0003676
Gso2g0937 1042 PANTHER PROTEIN ARGONAUTE 7 126 1041 - -
Gso2g0937 1042 Pfam PAZ domain 407 529 IPR003100 GO:0005515
Gso2g0937 1042 Gene3D - 578 754 - -
Gso2g0937 1042 Pfam Argonaute linker 1 domain 345 394 IPR014811 -
Gso2g0937 1042 Pfam N-terminal domain of argonaute 189 335 IPR032474 -
Gso2g0937 1042 Gene3D paz domain 390 517 - -
Gso2g0937 1042 MobiDBLite consensus disorder prediction 1 53 - -
Gso2g0937 1042 SMART Piwi_a_2 692 1003 IPR003165 GO:0003676
Gso2g0937 1042 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 126 1041 - -
Gso2g0937 1042 CDD Piwi_ago-like 561 1002 IPR045246 -
Gso2g0937 1042 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0937 Gso-Chr2 10827798 10833171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0937 117 1042 Eukaryotic Initiation Factors Gene Family AT1G48410 40.185 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0937 K11593 - gmx:100797755 1984.15