Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0926 ATGGGAAGGTCACCATGCTGTGAGAAGACAGGGCTAAAGAAAGGGCCATGGACACCGGAGGAAGACCAAAAGCTCATTGCTTTCATCGAAAAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGATGGTCGAATTATCTCCGACCTGATATAAAACGAGGGAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTAGGAAACAGGTGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACCCACCTCAAGAAGAGGCTGGACAAAATGGGCATAGACCCAACAACCCACAAGCCAAAAAATGAGTCCCTAGCCTACTCCAAAGACGGCTCGAACCTTGGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCCAGACTCGTAAGAGAATCCAAACTACAAGAACAACAAAACAACCTCGGACCTATGTCCTCTCCTTCCTCAACACAAATTACGAGGCTCGTTCTCAACAAAATCACACCCCTACAACAAAAACAACACTCACTACCACCGTGCCTCGACGTGCTCAAAGCGTGGCAAAGTTCATGGTCAAACAACAACAACAACATTAACAAATACTCATCACTAAACGACAAGAAGAAAACCATGCATGTGCCTAGCATGTATGCCATGATGCTTTCAAATGATGACCTAGAGTCTCCAACATCCACTTTGTGCTTCCCCGAGAGCGTGCAAATGAATAATAATAACAATAACTCTAACGCTATGGTCTCAACCAACCACGTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACCACCCTGGATGAGTTCATTATTACCAAAAGTTTAGGAACAACAAGTAGTGAGGGTGCAATTGAAACCGTGAATGGTGGTGGTAGTGACTCGTGGAGGTACTTCACCAAACACAACAATGAAGAAGAACAAGTTGAAACTGATGAGAAGACAATAATGTACGACACGATTTCATGTTTGCAAGACGATGACGGTGATATTATGGTGGCTGTTGAGGCATTAAGAGGTGCTGGTTATTATGGTGATGATAATAGCAACAATAATAATGTCACATTTACGCATCTCTCTAGCAATGTCAATAATATGGTGGGTTTCGAAAACGATTTTGATTCCAATGAAGATTTAGCGGCGGTGAACTTGCATGTGAAATTCGAGGAGAATAAGGATTATTGGAATGGCATGCTTAATTAG 1287 0.4406 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKNESLAYSKDGSNLGHMAQWESARLEAEARLVRESKLQEQQNNLGPMSSPSSTQITRLVLNKITPLQQKQHSLPPCLDVLKAWQSSWSNNNNNINKYSSLNDKKKTMHVPSMYAMMLSNDDLESPTSTLCFPESVQMNNNNNNSNAMVSTNHVGLINENYLLPPTTLDEFIITKSLGTTSSEGAIETVNGGGSDSWRYFTKHNNEEEQVETDEKTIMYDTISCLQDDDGDIMVAVEALRGAGYYGDDNSNNNNVTFTHLSSNVNNMVGFENDFDSNEDLAAVNLHVKFEENKDYWNGMLN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0926 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso2g0926 428 CDD SANT 69 112 IPR001005 -
Gso2g0926 428 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso2g0926 428 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso2g0926 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso2g0926 428 CDD SANT 16 61 IPR001005 -
Gso2g0926 428 Gene3D - 11 67 - -
Gso2g0926 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 410 - -
Gso2g0926 428 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 410 - -
Gso2g0926 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso2g0926 428 Gene3D - 69 138 - -
Gso2g0926 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso2g0926 428 SMART sant 13 63 IPR001005 -
Gso2g0926 428 SMART sant 66 114 IPR001005 -
Gso2g0926 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0926 Gso-Chr2 10679499 10683551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0926 1 170 MYB Transcription Factor Family AT5G15310 82.759 3.36e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0926 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0926 K09422 - gmx:100792994 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0926 2 10679499 10683551 Gso2g0926 2 10679499 10683551 ECH
Gso1g0448 1 6174351 6175737 Gso2g0926 2 10679499 10683551 GST