Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0916 ATGGCTCAAATTTGTTTGCTCTTGGTGGGGCTTCTCTCAATGTTCTCCTCTGCCTATGGCTACGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGATATGGAAACCTCTACAGCCAAGGTTATGGAACAAATACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAGATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCTTTACCAAACAATGCAGGAGGGTGGTGCAACCCTCCAATGCACCATTTTGACCTCTCTCAACCTGTTTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTTTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTCAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGGGATGTTCATGGTGTGGCCATCAAGGGGTCAAGAACAGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGTACAGCTGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 753 0.4914 MAQICLLLVGLLSMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTAVSYNVAPAGWSFGQTYTGAQFR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0916 250 PANTHER EXPANSIN-A15 5 249 IPR002963 GO:0009664
Gso2g0916 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Gso2g0916 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gso2g0916 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Gso2g0916 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Gso2g0916 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Gso2g0916 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Gso2g0916 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Gso2g0916 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Gso2g0916 250 PANTHER EXPANSIN 5 249 - -
Gso2g0916 250 Gene3D - 157 249 IPR036749 -
Gso2g0916 250 SMART dpbb_1 62 147 IPR007112 -
Gso2g0916 250 Gene3D - 16 153 IPR036908 -
Gso2g0916 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0916 Gso-Chr2 10475760 10478094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0916 1 250 Expansin Gene Family AT2G03090 80.632 5.70e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0916 - - gmx:100785757 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0916 2 10475760 10478094 Gso2g0916 2 10475760 10478094 ECH
Gso2g0916 2 10475760 10478094 Gso6g1641 6 17441892 17444849 ECH
Gso2g0916 2 10475760 10478094 Gso19g0210 19 2782909 2785373 ECH
Gso1g0436 1 5948136 5950419 Gso2g0916 2 10475760 10478094 GST