Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0914 ATGGCCAGCGGCAAGTGTTGCATGATCTCTCCACAACAAAACCAGAATGCCCCCACATGTTATCCTTCACCAATGGGAATGGTCTATGCAGACATGATGGGGTCTCTCTCTCTAGCCACCGTTTCAAATAATGCTTCTTCATCACAAGAAAGTAATGGTTATAGTTATGGTTATGCCTCTGGGGTGGAAAATGCAAGGAGTACAAGGTGGAGTTTTCCTTTCACGAGGGAGTTTCTTTCTTCAAACTTTGAAGACTGCAGTGATGTAGTAGTAGGGGCTGGGGACAGTAACAACAACATTAATGAGAAAACAAACCATAATAATGGCAAGTTCAGTGAAGAAGAAAGTAACCCTAATGAGAACAACCCTGCCGGTGGCAAAGAGGTGGATAGTGGGCACTCCAAACTTTGTGCAAGAGGGCATTGGAGACCTGCTGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGAGCATTCAGTGAAGAAGAAGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGGAACAAATGGGCCATGATTGCAAGGCTTTTTCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAACCTGTGTACAGAAGAGTGGATCAAAATCCAACCTTTGTTTGCAGCAGCAGAGATAATAATGCCTCAACCACAGAACCAGAACCAGAATCATCACCTTCCTATTATCCCAATCTCAATGACCGTGGAGTAGCACTCACCAATAACATTGCTAGTTTCCCATCCTTACATGGAGTAGCTGCTGGTGCTGGTGGAGTTGTTGAGTTTGGCTCAAATGTTTCTCCACTAAACATGACTAGAGGTAGAGAAGCAGTGTCAAACACCACACATGTTGGCTTGTGTGCTCAAGCTCAACAACAAGCACCATTTGATTTCTTCTCTGGTGGTGGAAGCCATGACATGGTGTTGGAGTCTATGAGCCAGATGAGAAGCAGGGAAAGGACCAATGAATCTTACAATCATCATTGCCAATTATCTGGTTTCTACCCTCATCATCCCCAACAATATTTGATGGCAATGCAACAACAGCTAGACAACAACAATTTTTACAGTTTCTTGAATTCCTCATCATCAGCATCAACAACAAGAACTAGGGAACCATCATCACCATGTGTTGCAGAAATCAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCTTTGGAGTAGGAGCCACATGA 1404 0.443 MASGKCCMISPQQNQNAPTCYPSPMGMVYADMMGSLSLATVSNNASSSQESNGYSYGYASGVENARSTRWSFPFTREFLSSNFEDCSDVVVGAGDSNNNINEKTNHNNGKFSEEESNPNENNPAGGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQPVYRRVDQNPTFVCSSRDNNASTTEPEPESSPSYYPNLNDRGVALTNNIASFPSLHGVAAGAGGVVEFGSNVSPLNMTRGREAVSNTTHVGLCAQAQQQAPFDFFSGGGSHDMVLESMSQMRSRERTNESYNHHCQLSGFYPHHPQQYLMAMQQQLDNNNFYSFLNSSSSASTTRTREPSSPCVAEIRDKVVNSDPPDGVPPPFFDFFGVGAT* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0914 467 Gene3D - 192 259 - -
Gso2g0914 467 CDD SANT 142 183 IPR001005 -
Gso2g0914 467 PANTHER MYB PROTEIN-RELATED 25 467 - -
Gso2g0914 467 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Gso2g0914 467 CDD SANT 193 233 IPR001005 -
Gso2g0914 467 SMART sant 138 187 IPR001005 -
Gso2g0914 467 SMART sant 190 238 IPR001005 -
Gso2g0914 467 MobiDBLite consensus disorder prediction 94 124 - -
Gso2g0914 467 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Gso2g0914 467 PANTHER MYB TRANSCRIPTION FACTOR 25 467 - -
Gso2g0914 467 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Gso2g0914 467 MobiDBLite consensus disorder prediction 94 132 - -
Gso2g0914 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Gso2g0914 467 MobiDBLite consensus disorder prediction 263 291 - -
Gso2g0914 467 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Gso2g0914 467 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Gso2g0914 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Gso2g0914 467 Gene3D - 139 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0914 Gso-Chr2 10435688 10438133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0914 113 264 MYB Transcription Factor Family AT1G69560 71.875 2.74e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0914 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0914 K09422 - gmx:100789305 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0914 2 10435688 10438133 Gso2g0914 2 10435688 10438133 ECH
Gso1g0428 1 5875152 5877612 Gso2g0914 2 10435688 10438133 GST