Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0903 ATGTTGAAAGTTGACGTAGTTGGGAACAAAAAAAGGAAGAGGTGTGGGAAGGTTTTCAGGTTCAAGAATTTTGGTGAACCTGGATACCCTGTTATGTTTAATGGGCCATTTCGTGAGAACGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTAATTTAAGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCATTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGCAATCATTTCATTTGCAATAAGAAGTATCACTTTGTGTTGCCCTCAAAGGAGGCACTGGCTACCTGCACAAGCTGTGAAGGTTGCTGTGATGCAGTTACTACAATTAATAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTATCAATGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAAAAGAGAGGAATGGAACTAAGACTTGTGAATGGAATAGCATACAACGAGTCATGGTTTGGCCATTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTACCACAAGGCCATACAAGCAATAAGAAGCATGCCATTATACTTAATCATACACCACATTGCCAATTCCAACCATGGCATTCCACTCATATTCTCAAGGTACCAAACACTTTCAGATCAATCCCTAGTGACCCTTGGTGACCTATTTTGTTACATGTTAGACCTTAAATCGCGCCTTCCTCGTGAAACATGCATTAGTTCCTATAACACAAATACCTTAGCAGTCGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTAATTGTTGAGGCCTTGAAAAGAACAAAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACAGGATTGCTAGATTTTGTATTGAAGTCACTAGGGAACCATGTTGTAGGAAACTACTTGGTTCGTCGAAGCTTGAACCCTGTGACCAAAGTCTTGGAATATTGTTTAGAAGACATTTCTAATGTGCACCCTTATGATAATGAAGGCTTGGTTATGAGTAACAAAGTGAAGGACAAGTATAAGATCACAAGGGCTCAACTAATGAAGGACATGCTTTATTTGTATAAGTACATTCTTATAGATCCAAAACCAATGATGGGGTCAGAATTTCTCTCGGCTATACCATTGGCAGCAAGGATAATTCTTGATACCAAGTATTTTATAAAAGATTACTTTGGAGATATTCCTTACCAGGTTGAATTAGGCTCGAATGATAAACTCAACCTTTATTGTACAATTTGGTTGAGAAACAATGTTGGCAGTGATGAGTACTTAAACAAAGCCATTATGCCACCCCATGAATGTTTCACATTGAAAAGAAATGCTACTATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTTAGAGAAATTTATTGGGGGTTAAGGAGTTTTGTAGTGGAATCATTTCGGAATTTAAGTGTCAATAATGAGACAGAAATGGTTTTTGGTCTAATTGAAGTGGGTGGAAAAGTTGTGCTTGAGGGTTGGCAAGGTGACATAGGAATAAACATGATTGAGCAAATATGTGAAAGTGATCCGAACAATGGTATAATGGATTGCACTTGTGGAACTATAGAAGATGATGGTGAGAGGATGGTCTCGTGTGATATTTGTGAAATTTGGCAACATAGTAGGTGTGTTCGAATTCCAAATGATGAAGAAATTCCTCATATTTTTTTATGCAAAAAGTGCGAGCAAGAAATTGTCTTGTTTCCTTCGTTGCCATAG 1971 0.3896 MLKVDVVGNKKRKRCGKVFRFKNFGEPGYPVMFNGPFRENVNALLEYANLESNLSMEMPMWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYVGWGNHFICNKKYHFVLPSKEALATCTSCEGCCDAVTTINNGKSKLIELQGHMMHGVFHSNGFGHLLCINGLEMGSNLAGNQIMEFWNRLCYGLQARKVSLNDISQKRGMELRLVNGIAYNESWFGHWGYKFGRGCFGVTQSMYHKAIQAIRSMPLYLIIHHIANSNHGIPLIFSRYQTLSDQSLVTLGDLFCYMLDLKSRLPRETCISSYNTNTLAVETNCRWSPKRIEMATRVIVEALKRTKFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVHPYDNEGLVMSNKVKDKYKITRAQLMKDMLYLYKYILIDPKPMMGSEFLSAIPLAARIILDTKYFIKDYFGDIPYQVELGSNDKLNLYCTIWLRNNVGSDEYLNKAIMPPHECFTLKRNATINDLKLEVERNFREIYWGLRSFVVESFRNLSVNNETEMVFGLIEVGGKVVLEGWQGDIGINMIEQICESDPNNGIMDCTCGTIEDDGERMVSCDICEIWQHSRCVRIPNDEEIPHIFLCKKCEQEIVLFPSLP* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0903 656 ProSitePatterns Zinc finger PHD-type signature. 601 645 IPR019786 -
Gso2g0903 656 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Gso2g0903 656 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 656 - -
Gso2g0903 656 CDD PHD_MMD1_like 600 645 - -
Gso2g0903 656 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 656 - -
Gso2g0903 656 Pfam PHD-finger 601 647 IPR019787 -
Gso2g0903 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 651 IPR013083 -
Gso2g0903 656 SMART PHD_3 600 646 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0903 Gso-Chr2 10294823 10297838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0903 10 656 PHD Transcription Factor Family AT5G22260 50.744 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso2g0903 PHD 3.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0903 - - gmx:100780210 1369.37