Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0902 ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGATCCGGTGGCGCAGACGGCGCAGGTGCCTTCCGAACCATCTCCACCTCCGGCCGCCGTGGATGCCGACGCCGCCGGGAGCTCCGGCACCTCACCGTCGGAGGATTGCGACGGCGAGGGCGGCGACGAGGAGGAGCCGCTGATCCAGATGGCAGAGTGCCGCATCTGCCAGGAGGAGGATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGTGCCGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGATCACCCACTGTACCCCAGGAACAAGTCTAA 870 0.5368 MSDHLVVFVDRLARPVPVDPVAQTAQVPSEPSPPPAAVDADAAGSSGTSPSEDCDGEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDNSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGSPTVPQEQV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0902 289 Pfam Protein of unknown function (DUF3675) 122 241 IPR022143 -
Gso2g0902 289 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Gso2g0902 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 126 IPR013083 -
Gso2g0902 289 SUPERFAMILY RING/U-box 69 121 - -
Gso2g0902 289 SMART ringv_2 70 117 IPR011016 GO:0008270
Gso2g0902 289 CDD RING_CH-C4HC3_MARCH 71 117 - -
Gso2g0902 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 287 IPR033275 -
Gso2g0902 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 287 - -
Gso2g0902 289 Coils Coil 159 179 - -
Gso2g0902 289 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Gso2g0902 289 MobiDBLite consensus disorder prediction 17 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0902 Gso-Chr2 10279082 10283383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0902 70 146 C3H Transcription Factor Family AT2G37950 37.079 3.24e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0902 - - gmx:100779674 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0902 2 10279082 10283383 Gso2g0902 2 10279082 10283383 ECH
Gso1g0412 1 5595232 5599813 Gso2g0902 2 10279082 10283383 GST