Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0901 ATGGACCTAACCAAGGACACAAATTCTCAAACCCCTCCACAACCCAACACCACCACAAACGGTTCCCTCAAGCACCACCACCACCACCCAACCACCGTGTCACCGCCGCAACAGCCACCCTCCACGACGGTTTTCTACAAAGAGTGCCTCAAAAACCATGCAGCCAGCATAGGTGGTCACGCGCTTGATGGGTGCGGTGAATTCATGCCCTCTTCTTCATCCAACCCCAATGAACCGCGCTCGCTAACGTGCGCCGCGTGCGGATGCCACCGTAACTTCCACCGCCGCCGCGACACACAGGAAAATCATCACCGCTCCAACTCCAGGCCCAATTTCATAAGCTTCTACCACTCTCCGCCGCTGTCTCGTCACGGGCCGGGCCTGAGCCCAACTCCAAGCCCGATGTCGAGCCCAAGCCCCCCGCCAATCTCGCATCATTTCCCACCTTCCTCCCACCATTTCCAAGGTCCAATACCGGCCCACGGGCTTTTGGGCCTTGGAAATGAAAATCACCATCATCACATGAGTTTTAATTTTAACTCTTCTTCCCACTCCACCCAAGGAAACACGAGTGGAAAGAAGAGGCATAGGACCAAGTTCAGCCATGAACAGAAACAAAAAATGTACAATTTCGCCGAGAAATTGGGTTGGAGAATGCAGAAAGCAGAAGAAGGATTGGTGCAAGATTTCTGCAACGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTTCTGCCAGGAACAAATCGTTGGAACCAGGTGAAAAAATCAATGGCACTGGTACTCATAGTAATAATAATAATAATCATCCTTACAACACAAACAGCACCAACGATGACACTCACTGA 870 0.5115 MDLTKDTNSQTPPQPNTTTNGSLKHHHHHPTTVSPPQQPPSTTVFYKECLKNHAASIGGHALDGCGEFMPSSSSNPNEPRSLTCAACGCHRNFHRRRDTQENHHRSNSRPNFISFYHSPPLSRHGPGLSPTPSPMSSPSPPPISHHFPPSSHHFQGPIPAHGLLGLGNENHHHHMSFNFNSSSHSTQGNTSGKKRHRTKFSHEQKQKMYNFAEKLGWRMQKAEEGLVQDFCNEIGVSRGVFKVWMHNNKNTSARNKSLEPGEKINGTGTHSNNNNNHPYNTNSTNDDTH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0901 289 MobiDBLite consensus disorder prediction 1 40 - -
Gso2g0901 289 MobiDBLite consensus disorder prediction 97 202 - -
Gso2g0901 289 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 28 256 - -
Gso2g0901 289 MobiDBLite consensus disorder prediction 125 147 - -
Gso2g0901 289 SUPERFAMILY Homeodomain-like 180 252 IPR009057 -
Gso2g0901 289 Gene3D - 178 255 - -
Gso2g0901 289 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 46 96 IPR006456 -
Gso2g0901 289 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 97 IPR006456 -
Gso2g0901 289 MobiDBLite consensus disorder prediction 251 289 - -
Gso2g0901 289 MobiDBLite consensus disorder prediction 1 21 - -
Gso2g0901 289 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 28 256 - -
Gso2g0901 289 MobiDBLite consensus disorder prediction 173 189 - -
Gso2g0901 289 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 193 250 IPR006455 -
Gso2g0901 289 Pfam ZF-HD protein dimerisation region 44 97 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0901 Gso-Chr2 10262326 10263777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0901 12 249 ZF-HD Transcription Factor Family AT5G15210 42.169 1.01e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso2g0901 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0901 - - gmx:100785050 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0901 2 10262326 10263777 Gso2g0901 2 10262326 10263777 ECH