Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0898 ATGATGGAAGAGAGAAATAATAATGATGCTGCTGAGAAACTGGATGAAGTTATGCTACCAGGGTTTAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGAAAGATTCAACAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAATTTGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAAAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCAAAGTGCATTGGCCTCAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTATCTCCAAAGTACATAGACAAGATCACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATCATCATATCCTAACCAAAGATCAAGACAACACTACCCAGTTTTGTTCAGACAACATGTCAATGACAAAGAAAACTACCTTAGCCAGCCAGTACTGTTCTAACAATTACAATGATTCACAACCCTTAACCACTAATAGCAGTACTCTTTGTCCCTTAGATGTGGCCTCATGCAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGAAGACCTTAGCACTAGCTTGTTATTCTCATCACCCCCCTTTGAAACATCAGAAACTAATCCCAAATCTACAATAATGGACGTTTCTTCCATGCTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAACAAGACTACTTCAGAGGACACAAATACAAATGCAGCTTCAAACTTTGGTGTGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACGTGAGAATATGCAAACCACATTTGGTAACCAGCAACAACAATATTGTGATAATATTTATGCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCGTGTTGATGACCCAGAGTTGGAGTTGGAGACAGTAGTACAACGATCCATTGGGTTTCCATTAAGTGTTACTATGCCTTTGAATATTGGAGATGCCTGGAAGTCAAATAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTATTCCACAACTAAGTGCTATACTTAG 1329 0.4101 MMEERNNNDAAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKITIPANESWAICRIFKKTNATAQRALSHSWVSSLPETRTSDHHILTKDQDNTTQFCSDNMSMTKKTTLASQYCSNNYNDSQPLTTNSSTLCPLDVASCKSIINPLLYKAFDHFPISNEDLSTSLLFSSPPFETSETNPKSTIMDVSSMLLNMSSSVLGDFNKTTSEDTNTNAASNFGVLQEHCSGYPIPFLRENMQTTFGNQQQQYCDNIYALVKGPNVNVPRVDDPELELETVVQRSIGFPLSVTMPLNIGDAWKSNNLLWDTSSFPCDVPSSYYSTTKCYT* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0898 442 Gene3D NAC domain 27 181 IPR036093 GO:0003677|GO:0006355
Gso2g0898 442 SUPERFAMILY NAC domain 16 176 IPR036093 GO:0003677|GO:0006355
Gso2g0898 442 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Gso2g0898 442 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 440 - -
Gso2g0898 442 ProSiteProfiles NAC domain profile. 18 176 IPR003441 GO:0003677|GO:0006355
Gso2g0898 442 PANTHER PROTEIN FEZ ISOFORM X1 1 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0898 Gso-Chr2 10225786 10228183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0898 7 319 NAC Transcription Factor Family AT1G26870 56.135 1.07e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso2g0898 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0898 - - gmx:100783995 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0898 2 10225786 10228183 Gso2g0898 2 10225786 10228183 ECH
Gso1g0406 1 5468431 5470796 Gso2g0898 2 10225786 10228183 GST