Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0892 ATGGTGGTGTCGTTCACCGAAAGGAAAAACTTCGGCATTGACTGGTCTATGGTGGAATCATTACCGAACTTCAAATTCAGAGTGCTACGGGGGCAAAAGGAAGGACTCAATTGCGCGGTGTGCCTGAACAAGTTTAAGGTCGCGAAGGTTCTCCGGCTATTGTCGAAATGCAAGCACGCGTTTCACGTGGAGTGTGTGGACTCGTGGTTGGACGTGCATTCTATGTGTCCTCTCTGCTGCTATTGCATGGATCCAGAGGACATTTTCTTGGTAGAGGAAGCAAAGCCTTTCCACCAAAGTCATCAACAACAGAACAACGATCAGGGACGCGTGTGTTTGAATCTGGACCTGGAGAAGCAGGGGATAGTAAAGTCTCGACAGAGGCATTTGTTCGTTCGGGGTGGGGGAAGGAGAAACAACAGAGGAGTAGCAACAGAGTCGGAGGTGGACGACGTCATTTAG 462 0.4978 MVVSFTERKNFGIDWSMVESLPNFKFRVLRGQKEGLNCAVCLNKFKVAKVLRLLSKCKHAFHVECVDSWLDVHSMCPLCCYCMDPEDIFLVEEAKPFHQSHQQQNNDQGRVCLNLDLEKQGIVKSRQRHLFVRGGGRRNNRGVATESEVDDVI* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0892 153 SMART ring_2 38 79 IPR001841 -
Gso2g0892 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 88 IPR013083 -
Gso2g0892 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 147 - -
Gso2g0892 153 Pfam Ring finger domain 37 79 IPR001841 -
Gso2g0892 153 PANTHER RING-H2 FINGER PROTEIN ATL43 4 147 - -
Gso2g0892 153 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Gso2g0892 153 SUPERFAMILY RING/U-box 32 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0892 Gso-Chr2 10171010 10171471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0892 8 91 C3H Transcription Factor Family AT5G05810 67.857 6.80e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0892 K19041 - gsj:114372535 311.997