Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0887 ATGGAATTGGAAGCTGATCATCAAAATGGGATTCGAAGCAGACTCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACATTGATGACGTCACGGAACAACCTTGTTCCACCACCAGCGTGGTAACTGCTACTACTACTGCTATTACTACTACTACTACTTCAGATAACAACGACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCGAAACGGAGTTCCACCAAGGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGCGCTGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAGTCTGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTCATCGCCGCCACTGGGACAGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCTGGCTCCACCATGTCGGCCCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACGTCCGCCGCCGCGGCGGCGGCGGCTCAGCTGAGAAGCCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGAAGGAGCATGCTGGAGAACACTTCTTCAATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTTAATGTAATTCAACAAGCGAAACAAGAGCTTCGGGAAGAATCCGGCGGGGGCGGCGGTCTTGAATCGGTGGCTTCTGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCAAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGCAACCAAGCCATGAGTGGTGGTGGCAGCGGCGGCGGTGGCAACAATGGTAGCAGCGATAATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGTGTGTATAGAGGAGCTATGTCTGCTCCAGGTGGCATTCATTTCATGAATTTCGCTTCTCCGATGAACCTTATGCCCGGAGGTCAACTAGGTTCCGGTATCGTTGGTGGCGGTGGCGGCGGTGGTGGCAACGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCGAACGGCGTCTCGGAGCCTCCGGGCAGTGCCGGGCAACATCACAGCGGAGACGATGGACGTGATTCCACCAGTCAACATTCCTGA 1275 0.5608 MELEADHQNGIRSRLNFPLQLLEKKDIDDVTEQPCSTTSVVTATTTAITTTTTSDNNDLHLAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAAAAAQLRSRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESGGGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQAMSGGGSGGGGNNGSSDNNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMNLMPGGQLGSGIVGGGGGGGGNGGAQLLSESNLGMLAALNAYRQIPANGVSEPPGSAGQHHSGDDGRDSTSQHS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0887 424 MobiDBLite consensus disorder prediction 230 264 - -
Gso2g0887 424 MobiDBLite consensus disorder prediction 60 86 - -
Gso2g0887 424 Pfam TCP family transcription factor 74 205 IPR017887 -
Gso2g0887 424 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 4 424 - -
Gso2g0887 424 MobiDBLite consensus disorder prediction 396 424 - -
Gso2g0887 424 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Gso2g0887 424 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 424 IPR005333 GO:0003700
Gso2g0887 424 MobiDBLite consensus disorder prediction 52 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0887 Gso-Chr2 10117806 10119765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0887 17 357 TCP Transcription Factor Family AT3G47620 42.132 1.42e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso2g0887 TCP 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0887 - - gmx:100781296 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0887 2 10117806 10119765 Gso2g0887 2 10117806 10119765 ECH
Gso1g0393 1 5252477 5254623 Gso2g0887 2 10117806 10119765 GST
Gso2g0887 2 10117806 10119765 Gso5g0227 5 2385895 2387941 PCT
Gso2g0887 2 10117806 10119765 Gso17g0834 17 7828907 7831750 PCT