Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0868 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATTCCCGGCCCCAACGGTGGTGGTGCTGCTGGAAATCAGTTCGTGACGACGTCGCTTTACGTCGGAGATCTCGACCCGAACGTCACGGACGCCCAGCTGTATGATTTGTTCAACCAATTGGGGCAAGTCGTATCCGTTAGGGTTTGCAGGGACTTGACCAGTAGGAGATCGCTCGGTTATGGTTATGTCAACTTTAGCAACCCGCAAGATGCTGCCAGAGCTTTGGATGTTCTGAACTTCACTCCTCTCAATAACAGGCCCATCCGTATCATGTATTCGCATCGTGATCCCAGTATCCGTAAAAGTGGGCAAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAGGCGTTGCATGATACTTTTTCTACATTTGGGAATATCCTTTCGTGCAAGGTAGCTACAGATTCATCTGGGCAATCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAGGCCATTGAGAAGCTGAATGGAATGCTGCTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTACTGCTGACAAGGCAAAGTTCAACAATGTTTTTGTGAAGAATCTGTCAGAATCAACCACTGATGATGAATTGAAGAATGTTTTTGGTGAATTTGGAACTATTACTAGTGCTGTCGTAATGAGGGATGGAGATGGGAAATCAAAGTGTTTTGGATTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAGTTTGATGACAAAGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCCTCGGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATAACTTCTTGCAAGGTTATGAGAGACCCAAATGGCATAAGTCGTGGATCAGGATTTGTTGCATTCTCAACTCCTGATGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTAGCCCAACGGAAAGAAGATAGGAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTCGGTCCTCGTGTGCCAATGTATCCCCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGCCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTTCCTGGTATGAGGCCAGGTGCAGCTCCCGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTACAGGTGCAGTCCAGCAGTCCCAGCAGCCCGTTCCAATGATGCCACAGCAGATGCTACCTAGGGGGCGTGTCTATCGTTATCCTCCTGGTAGGGGTATGCCAGATGTTTCTATGCCCGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCAATCTCCCAGCAAATTCCTGTTGGGGCTTTAGCAACAGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTCTACCCCCTTGTGGAACAGTTAGAGCCTGACAATGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCGCCAGAAGCCCTGAAAGCAAAGGTGGCGGAGGCAATGGACGTCCTAAGAAATGTTGCTCAGCAACAGGCTGGCGGTACTGCGGATCAGCTGGCTTCATTATCTCTTAATGACAACCTTGTTTCTTAA 1947 0.4705 MAQVQVPPQNAIPGPNGGGAAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVGGMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNLVS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0868 648 PANTHER RNA BINDING PROTEIN 17 632 - -
Gso2g0868 648 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676
Gso2g0868 648 CDD RRM3_I_PABPs 206 285 - -
Gso2g0868 648 PANTHER POLYADENYLATE-BINDING PROTEIN 17 632 - -
Gso2g0868 648 CDD RRM4_I_PABPs 309 387 - -
Gso2g0868 648 Gene3D - 192 291 IPR012677 -
Gso2g0868 648 SMART poly_2 562 625 IPR002004 GO:0003723
Gso2g0868 648 Gene3D - 292 395 IPR012677 -
Gso2g0868 648 Coils Coil 282 306 - -
Gso2g0868 648 SMART rrm1_1 311 383 IPR000504 GO:0003723
Gso2g0868 648 SMART rrm1_1 117 189 IPR000504 GO:0003723
Gso2g0868 648 SMART rrm1_1 29 102 IPR000504 GO:0003723
Gso2g0868 648 SMART rrm1_1 208 280 IPR000504 GO:0003723
Gso2g0868 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Gso2g0868 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Gso2g0868 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 623 IPR006515 GO:0003723
Gso2g0868 648 SMART rrm2_1 117 189 IPR003954 GO:0003676
Gso2g0868 648 SMART rrm2_1 311 383 IPR003954 GO:0003676
Gso2g0868 648 SMART rrm2_1 29 102 IPR003954 GO:0003676
Gso2g0868 648 SMART rrm2_1 208 280 IPR003954 GO:0003676
Gso2g0868 648 Gene3D - 117 189 IPR012677 -
Gso2g0868 648 CDD RRM2_I_PABPs 114 190 IPR045305 -
Gso2g0868 648 Gene3D - 21 116 IPR012677 -
Gso2g0868 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Gso2g0868 648 MobiDBLite consensus disorder prediction 472 493 - -
Gso2g0868 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Gso2g0868 648 Gene3D - 546 629 - -
Gso2g0868 648 CDD RRM1_I_PABPs 29 108 - -
Gso2g0868 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Gso2g0868 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Gso2g0868 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Gso2g0868 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Gso2g0868 648 SUPERFAMILY PABC (PABP) domain 491 640 IPR036053 GO:0003723
Gso2g0868 648 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Gso2g0868 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Gso2g0868 648 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0868 Gso-Chr2 9864425 9869602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0868 27 647 Eukaryotic Initiation Factors Gene Family AT1G49760 75.633 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0868 K13126 - gmx:100813735 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1823 7 40894604 40899772 Gso2g0868 2 9864425 9869602 GST